Browse Element(s) Details


Os.15514.1.S1_at

Description gb:AK099953.1
DB_XREF= gi:32985162
TID=Os.15514.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.15514 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013124C24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013124C24, full insert sequence.
FL= gb:AK099953.1 gb:AK069373.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3740011/11expressed protein
LOC_Os05g373408/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37360OsAffx.27208.1.S1_at11/115+21774732..21775010hypothetical protein
LOC_Os05g37370NANA5+21781235..21781789retrotransposon protein, putative, unclassified
LOC_Os05g37380NANA5+21782334..21788489retrotransposon protein, putative, unclassified
LOC_Os05g37390Os.18982.1.S1_at11/115+21792752..21795268G10 protein homolog, putative, expressed
LOC_Os05g37400Os.15514.1.S1_at11/115+21798628..21805868expressed protein
LOC_Os05g37400Os.15514.1.S2_at11/115+21798628..21805868expressed protein
LOC_Os05g37410Os.26665.1.S1_x_at11/115+21803108..21813723HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g37410OsAffx.14993.1.S1_x_at10/115+21803108..21813723HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g37410Os.53059.1.S1_x_at7/115+21803108..21813723HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g37410OsAffx.14993.1.S1_at4/115+21803108..21813723HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g37420OsAffx.4545.1.S1_at11/115+21815586..21816504expressed protein
LOC_Os05g37434Os.18844.1.S1_at11/115+21820047..21828143Arginine-tRNA-protein transferase, C terminus containing protein, expressed
LOC_Os05g37434OsAffx.27209.1.S1_at11/115+21820047..21828143Arginine-tRNA-protein transferase, C terminus containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15514.1.S1_at--609--10151Chr05:21801257..21801281 (25 bp)
TATCGCAGCAGGATCATACCACGGG
LOC_Os05g37400
Os.15514.1.S1_at--563--10692Chr05:21801306..21801330 (25 bp)
TTGCTGGTTTGTTCCGGTTGCCAAC
LOC_Os05g37400
Os.15514.1.S1_at--634--6692Chr05:21801322..21801346 (25 bp)
GTTGCCAACAGACTCTTTTGCTCAA
LOC_Os05g37400
Os.15514.1.S1_at--1124--1032Chr05:21801401..21801425 (25 bp)
AGTCGGGAAAACCTCTCAAATCATT
LOC_Os05g37400
Os.15514.1.S1_at--390--3472Chr05:21801427..21801451 (25 bp)
CAGGGCAAATCTGTCACTTTCACGA
LOC_Os05g37400
Os.15514.1.S1_at--903--2031Chr05:21801442..21801466 (25 bp)
ACTTTCACGATATGGCTCCGAGTTC
LOC_Os05g37400
Os.15514.1.S1_at--825--7072Chr05:21801492..21801516 (25 bp)
GTAATTCTATGTTGCTGTCGACACC
LOC_Os05g37400
Os.15514.1.S1_at--1102--3432Chr05:21801546..21801570 (25 bp)
CAGATTTCAGAGTAGGCGACGCTTA
LOC_Os05g37400
Os.15514.1.S1_at--1033--10412Chr05:21801568..21801592 (25 bp)
TTATTTCCCCTCTGAAGTTCCAAGG
LOC_Os05g37400
Os.15514.1.S1_at--670--9111Chr05:21801646..21801670 (25 bp)
TGCTGGCGATTACTGCTCGAATAAG
LOC_Os05g37400
Os.15514.1.S1_at--1059--7512Chr05:21801670..21801694 (25 bp)
GTGGACGTTATAGCTATGCATTCTT
LOC_Os05g37400
Target Sequence 
TATCGCAGCAGGATCATACCACGGGATGACNTGAAAGTGCCGGTGGGCCTTGCTGGTTTGTTCCGGTTGCCAACAGACTC
TTTTGCTCAAAATGAGTTGTGTTCAGCTGATGGCTATCNTTCAAGGTTCAGTTTGACAGCAACAAGTCGGGAAAACCTCT
CAAATCATTTCAGGGCAAATCTGTCACTTTCACGATATGGCTCCGAGTTCTCACCGGATCCTTGTTTCAGNGCTCGTAAT
TCTATGTTGCTGTCGACACCAACTTTTGGTGGATGTAGCAANCCAGTGTCAGATTTCAGAGTAGGCGACGCTTATTTCCC
CTCTGAAGTTCCAAGGTCTAGCAATAGAAGAGGGATGCCTTNTGGAGATCAAGGGATGCTGTTCCATTNTGCTGGCGATT
ACTGCTCGAATAAGTGGACGTTATAGCTATGCATTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15514.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis