Browse Element(s) Details


OsAffx.27209.1.S1_at

Description tigr:9633.m03458
TID=OsAffx.27209.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3743411/11Arginine-tRNA-protein transferase, C terminus containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37390Os.18982.1.S1_at11/115+21792752..21795268G10 protein homolog, putative, expressed
LOC_Os05g37400Os.15514.1.S1_at11/115+21798628..21805868expressed protein
LOC_Os05g37400Os.15514.1.S2_at11/115+21798628..21805868expressed protein
LOC_Os05g37410Os.26665.1.S1_x_at11/115+21803108..21813723HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g37410OsAffx.14993.1.S1_x_at10/115+21803108..21813723HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g37410Os.53059.1.S1_x_at7/115+21803108..21813723HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g37410OsAffx.14993.1.S1_at4/115+21803108..21813723HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g37420OsAffx.4545.1.S1_at11/115+21815586..21816504expressed protein
LOC_Os05g37434Os.18844.1.S1_at11/115+21820047..21828143Arginine-tRNA-protein transferase, C terminus containing protein, expressed
LOC_Os05g37434OsAffx.27209.1.S1_at11/115+21820047..21828143Arginine-tRNA-protein transferase, C terminus containing protein, expressed
LOC_Os05g37450Os.54080.1.S1_at11/115+21831690..21834195Starch binding domain containing protein, expressed
LOC_Os05g37460Os.12682.1.S1_at11/115+21836751..21837732expressed protein
LOC_Os05g37470Os.12475.1.S1_s_at11/115+21843682..21848856AUX1-like permease, putative, expressed
LOC_Os05g37470OsAffx.7026.1.S1_x_at2/115+21843682..21848856AUX1-like permease, putative, expressed
LOC_Os05g37480OsAffx.14994.1.S1_at11/115+21851282..21853570hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0010150biological_processleaf senescence
GO:0016598biological_processprotein arginylation
GO:0004057molecular_functionarginyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27209.1.S1_at--936--5091Chr05:21827289..21827309 (21 bp)
GCACGATATGGCCTTAGAGCGTTTC
LOC_Os05g37434
OsAffx.27209.1.S1_at--273--10111Chr05:21827283..21827307 (25 bp)
TATGGCCTTAGAGCGTTTCAGATGC
LOC_Os05g37434
OsAffx.27209.1.S1_at--118--10451Chr05:21827276..21827300 (25 bp)
TTAGAGCGTTTCAGATGCCTCCGTT
LOC_Os05g37434
OsAffx.27209.1.S1_at--762--5871Chr05:21827273..21827297 (25 bp)
GAGCGTTTCAGATGCCTCCGTTTTG
LOC_Os05g37434
OsAffx.27209.1.S1_at--483--10331Chr05:21827268..21827292 (25 bp)
TTTCAGATGCCTCCGTTTTGCGCTT
LOC_Os05g37434
OsAffx.27209.1.S1_at--248--6791Chr05:21827254..21827278 (25 bp)
GTTTTGCGCTTCACCTTGTTTACAT
LOC_Os05g37434
OsAffx.27209.1.S1_at--736--4531Chr05:21827249..21827273 (25 bp)
GCGCTTCACCTTGTTTACATCAATG
LOC_Os05g37434
OsAffx.27209.1.S1_at--408--2971Chr05:21827228..21827252 (25 bp)
AATGGACATCCAATTCTGTCTCTGA
LOC_Os05g37434
OsAffx.27209.1.S1_at--578--8131Chr05:21827225..21827249 (25 bp)
GGACATCCAATTCTGTCTCTGAAAT
LOC_Os05g37434
OsAffx.27209.1.S1_at--338--9211Chr05:21827220..21827244 (25 bp)
TCCAATTCTGTCTCTGAAATGGGAT
LOC_Os05g37434
OsAffx.27209.1.S1_at--251--3891Chr05:21827213..21827237 (25 bp)
CTGTCTCTGAAATGGGATGAAAATC
LOC_Os05g37434
Target Sequence 
GCACGATATGGCCTTAGAGCGTTTCAGATGCCTCCGTTTTGCGCTTCACCTTGTTTACATCAATGGACATCCAATTCTGT
CTCTGAAATGGGATGAAAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27209.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis