Browse Element(s) Details


OsAffx.14994.1.S1_at

Description tigr:9633.m03462
TID=OsAffx.14994.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3748011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37434Os.18844.1.S1_at11/115+21820047..21828143Arginine-tRNA-protein transferase, C terminus containing protein, expressed
LOC_Os05g37434OsAffx.27209.1.S1_at11/115+21820047..21828143Arginine-tRNA-protein transferase, C terminus containing protein, expressed
LOC_Os05g37450Os.54080.1.S1_at11/115+21831690..21834195Starch binding domain containing protein, expressed
LOC_Os05g37460Os.12682.1.S1_at11/115+21836751..21837732expressed protein
LOC_Os05g37470Os.12475.1.S1_s_at11/115+21843682..21848856AUX1-like permease, putative, expressed
LOC_Os05g37470OsAffx.7026.1.S1_x_at2/115+21843682..21848856AUX1-like permease, putative, expressed
LOC_Os05g37480OsAffx.14994.1.S1_at11/115+21851282..21853570hypothetical protein
LOC_Os05g37490NANA5+21855832..21856146hypothetical protein
LOC_Os05g37500Os.12591.1.S1_at11/115+21859888..21876601expressed protein
LOC_Os05g37510OsAffx.27210.1.S1_at11/115+21878353..21878709hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14994.1.S1_at--493--6151Chr05:21851342..21851366 (25 bp)
GAGGTCGGCATCGACAGCCAGCTGT
LOC_Os05g37480
OsAffx.14994.1.S1_at--1063--5971Chr05:21851379..21851403 (25 bp)
GAGACAGTAGTTGTGTGGACAGCAC
LOC_Os05g37480
OsAffx.14994.1.S1_at--920--8131Chr05:21851600..21851624 (25 bp)
GGAACCGGTGCAGCGGTATCCATGC
LOC_Os05g37480
OsAffx.14994.1.S1_at--339--6911Chr05:21851615..21851639 (25 bp)
GTATCCATGCGCCAACAGAGGTTTA
LOC_Os05g37480
OsAffx.14994.1.S1_at--760--10211Chr05:21851661..21851685 (25 bp)
TATTAGTTGTGGATAGACAGGCGGC
LOC_Os05g37480
OsAffx.14994.1.S1_at--980--7511Chr05:21852386..21852406 (21 bp)
GTGGCAGGTTCCTCGTGTGGTTTCC
LOC_Os05g37480
OsAffx.14994.1.S1_at--734--3991Chr05:21852395..21852419 (25 bp)
CGTGTGGTTTCCGATGGCAAATATT
LOC_Os05g37480
OsAffx.14994.1.S1_at--392--2931Chr05:21852704..21852728 (25 bp)
AAGGAAGCACCTTGCCCTTGCAATG
LOC_Os05g37480
OsAffx.14994.1.S1_at--1107--9151Chr05:21852716..21852740 (25 bp)
TGCCCTTGCAATGTCAACTTCTGGA
LOC_Os05g37480
OsAffx.14994.1.S1_at--1037--5171Chr05:21852723..21852747 (25 bp)
GCAATGTCAACTTCTGGAGCACCAC
LOC_Os05g37480
OsAffx.14994.1.S1_at--6--8551Chr05:21852737..21852761 (25 bp)
TGGAGCACCACCCTACGGAATATCA
LOC_Os05g37480
Target Sequence 
GAGGTCGGCATCGACAGCCAGCTGTGGAGGTGCGGCGGAGACAGTAGTTGTGTGGACAGCACCGACGGTAGTGGAAGGCT
GGCGCCACTGGCTTGCAGGGGAGGCTTCGGCGGCGCTGACTGGAGGCCATGGTGGTGGCGCGAGTATGCATGGTCAGCGG
CGGGAGGTCGGTGCGGCGTGAGGACGCGTGTTGGAAGCCGGCGTGGATCGCGCGACGAGGGTGGCCGTGTGACGGCACGC
GGAGGCTGGACCGGCTGGGGAACCGGTGCAGCGGTATCCATGCGCCAACAGAGGTTTAGACTGTGGTGGAGCAATGGTGT
ATTAGTTGTGGATAGACAGGCGGCGGGTGGCAGGTTCCTCGTGTGGTTTCCGATGGCAAATATTTTTTTAGTTAATGAAA
GGAAGCACCTTGCCCTTGCAATGTCAACTTCTGGAGCACCACCCTACGGAATATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14994.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis