Browse Element(s) Details


Os.18844.1.S1_at

Description gb:AK099450.1
DB_XREF= gi:32984659
TID=Os.18844.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18844 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013022G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013022G09, full insert sequence.
FL= gb:AK071336.1 gb:AK065861.1 gb:AK099450.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3743411/11Arginine-tRNA-protein transferase, C terminus containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37390Os.18982.1.S1_at11/115+21792752..21795268G10 protein homolog, putative, expressed
LOC_Os05g37400Os.15514.1.S1_at11/115+21798628..21805868expressed protein
LOC_Os05g37400Os.15514.1.S2_at11/115+21798628..21805868expressed protein
LOC_Os05g37410Os.26665.1.S1_x_at11/115+21803108..21813723HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g37410OsAffx.14993.1.S1_x_at10/115+21803108..21813723HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g37410Os.53059.1.S1_x_at7/115+21803108..21813723HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g37410OsAffx.14993.1.S1_at4/115+21803108..21813723HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g37420OsAffx.4545.1.S1_at11/115+21815586..21816504expressed protein
LOC_Os05g37434Os.18844.1.S1_at11/115+21820047..21828143Arginine-tRNA-protein transferase, C terminus containing protein, expressed
LOC_Os05g37434OsAffx.27209.1.S1_at11/115+21820047..21828143Arginine-tRNA-protein transferase, C terminus containing protein, expressed
LOC_Os05g37450Os.54080.1.S1_at11/115+21831690..21834195Starch binding domain containing protein, expressed
LOC_Os05g37460Os.12682.1.S1_at11/115+21836751..21837732expressed protein
LOC_Os05g37470Os.12475.1.S1_s_at11/115+21843682..21848856AUX1-like permease, putative, expressed
LOC_Os05g37470OsAffx.7026.1.S1_x_at2/115+21843682..21848856AUX1-like permease, putative, expressed
LOC_Os05g37480OsAffx.14994.1.S1_at11/115+21851282..21853570hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0010150biological_processleaf senescence
GO:0016598biological_processprotein arginylation
GO:0004057molecular_functionarginyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18844.1.S1_at--266--6251Chr05:21820932..21820956 (25 bp)
GATGGTTCGATCAGAATCCAACACT
LOC_Os05g37434
Os.18844.1.S1_at--399--6431Chr05:21820467..21820491 (25 bp)
GATCTTCTGGGAGTCGTTGGACGAA
LOC_Os05g37434
Os.18844.1.S1_at--347--991Chr05:21820437..21820461 (25 bp)
AGGAGGCACCTCGAACAGCTAGAAA
LOC_Os05g37434
Os.18844.1.S1_at--778--3691Chr05:21820374..21820398 (25 bp)
CTATCTGATCGCATGGTTTATTCCC
LOC_Os05g37434
Os.18844.1.S1_at--743--10411Chr05:21820357..21820381 (25 bp)
TTATTCCCTGTAGTTGGCCTGCAAT
LOC_Os05g37434
Os.18844.1.S1_at--693--7231Chr05:21820329..21820353 (25 bp)
GTCCCAAGGGAGCAATGCGACCATT
LOC_Os05g37434
Os.18844.1.S1_at--965--10131Chr05:21820284..21820308 (25 bp)
TATGCTAATCGCTTCGCAGTCGAAT
LOC_Os05g37434
Os.18844.1.S1_at--712--5271Chr05:21820234..21820258 (25 bp)
GAATGACACATTTTTCCGGCCGATT
LOC_Os05g37434
Os.18844.1.S1_at--756--5311Chr05:21820195..21820219 (25 bp)
GAAGTCCGTATTCCATAAACTGTTG
LOC_Os05g37434
Os.18844.1.S1_at--478--1151Chr05:21820152..21820176 (25 bp)
AGTCGTTTGGTTTCTGCACATGATT
LOC_Os05g37434
Os.18844.1.S1_at--1136--2411Chr05:21820093..21820117 (25 bp)
AAAACTCGAGGACCGCAGGCGTTGA
LOC_Os05g37434
Target Sequence 
GATGGTTCGATCAGAATCCAACACTGATGTAATGGAGGATTGTTCCAGCATAATTGATTTTGAAAATGTCATGATGGATC
TGAATGGTTCTCGAGTTAAATATAAGGATCTTCTGGGAGTCGTTGGACGAATCGAGAGGAGGCACCTCGAACAGCTAGAA
AGGCAATTGAGCAAATACGTGAAAGTTGTAGGGAAGGAGCTATCTGATCGCATGGTTTATTCCCTGTAGTTGGCCTGCAA
TTCTGTCCCAAGGGAGCAATGCGACCATTTAGAGGTACAATAACATGTTTATGCTAATCGCTTCGCAGTCGAATTCTGGT
GGGTTCAGGTTGGAGGCTGGAATGACACATTTTTCCGGCCGATTCGTTATCTGTCATTGAAGTCCGTATTCCATAAACTG
TTGGCCGAAGGGTATAGCACAAGTCGTTTGGTTTCTGCACATGATTCTACATAAAAATAGCACATCTGTTTCTTGATGAA
AAAAACTCGAGGACCGCAGGCGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18844.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis