Browse Element(s) Details


Os.26665.1.S1_x_at

Description gb:AK068137.1
DB_XREF= gi:32978155
TID=Os.26665.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26665 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013134J03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013134J03, full insert sequence.
FL= gb:AK068137.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3741011/11HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g373508/11HhH-GPD superfamily base excision DNA repair protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37370NANA5+21781235..21781789retrotransposon protein, putative, unclassified
LOC_Os05g37380NANA5+21782334..21788489retrotransposon protein, putative, unclassified
LOC_Os05g37390Os.18982.1.S1_at11/115+21792752..21795268G10 protein homolog, putative, expressed
LOC_Os05g37400Os.15514.1.S1_at11/115+21798628..21805868expressed protein
LOC_Os05g37400Os.15514.1.S2_at11/115+21798628..21805868expressed protein
LOC_Os05g37410Os.26665.1.S1_x_at11/115+21803108..21813723HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g37410OsAffx.14993.1.S1_x_at10/115+21803108..21813723HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g37410Os.53059.1.S1_x_at7/115+21803108..21813723HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g37410OsAffx.14993.1.S1_at4/115+21803108..21813723HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g37420OsAffx.4545.1.S1_at11/115+21815586..21816504expressed protein
LOC_Os05g37434Os.18844.1.S1_at11/115+21820047..21828143Arginine-tRNA-protein transferase, C terminus containing protein, expressed
LOC_Os05g37434OsAffx.27209.1.S1_at11/115+21820047..21828143Arginine-tRNA-protein transferase, C terminus containing protein, expressed
LOC_Os05g37450Os.54080.1.S1_at11/115+21831690..21834195Starch binding domain containing protein, expressed
LOC_Os05g37460Os.12682.1.S1_at11/115+21836751..21837732expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0006284biological_processbase-excision repair
GO:0006342biological_processchromatin silencing
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0005634cellular_componentnucleus
GO:0003906molecular_functionDNA-(apurinic or apyrimidinic site) lyase activity
GO:0019104molecular_functionDNA N-glycosylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26665.1.S1_x_at--573--5012Chr05:21811296..21811320 (25 bp)
GCAGGAATTCCTTTCTTTCTGTTAT
LOC_Os05g37410
Os.26665.1.S1_x_at--1091--372Chr05:21811244..21811268 (25 bp)
ATCAACAAGATTGCCGCGGTCATGC
LOC_Os05g37410
Os.26665.1.S1_x_at--85--4151Chr05:21811230..21811254 (25 bp)
CGCGGTCATGCATGGAAGCCCTGTA
LOC_Os05g37410
Os.26665.1.S1_x_at--796--7951Chr05:21811008..21811032 (25 bp)
GGATCAACCTTGACATTCATTGCGA
LOC_Os05g37410
Os.26665.1.S1_x_at--313--10192Chr05:21810860..21810967 (25 bp)
TATATGGATTACCATGCCCTCTCTT
LOC_Os05g37410
Os.26665.1.S1_x_at--541--4192Chr05:21810844..21810868 (25 bp)
CCCTCTCTTTCTTCTTTAGGAGCAA
LOC_Os05g37410
Os.26665.1.S1_x_at--606--5272Chr05:21810806..21810830 (25 bp)
GAATGCTCTAGTCCCATATGTTGGT
LOC_Os05g37410
Os.26665.1.S1_x_at--950--7571Chr05:21810780..21810804 (25 bp)
GGGCGGTGGTTCCTTATCAGACACA
LOC_Os05g37410
Os.26665.1.S1_x_at--593--10212Chr05:21810749..21810773 (25 bp)
TTTAGTCAAGAAGCAACGCCCTCGA
LOC_Os05g37410
Os.26665.1.S1_x_at--1002--2592Chr05:21810735..21810759 (25 bp)
AACGCCCTCGAGCTAAGGTTGACTT
LOC_Os05g37410
Os.26665.1.S1_x_at--428--2712Chr05:21810669..21810693 (25 bp)
AAGCAGCTGACCCTGTAGATGGAAC
LOC_Os05g37410
Target Sequence 
GCAGGAATTCCTTTCTTTCTGTTATGGATCTTGAGAAGAATACTTCACAAGAATCAACAAGATTGCCGCGGTCATGCATG
GAAGCCCTGTACGAGAGTTCCTNNNNNNNNNNNNNNNNNGAGGATCAACCTTGACATTCATTGCGAAGTACCAGTAGAAA
ACTCACCAAATACATCAACGCCACCATATATGGATTACCATGCCCTCTCTTTCTTCTTTAGGAGCAACAAATTATTTGCC
GAATGCTCTAGTCCCATATGTTGGTGGGGCGGTGGTTCCTTATCAGACACAATTTCATTTAGTCAAGAAGCAACGCCCTC
GAGCTAAGGTTGACTTGGATTTTGAAACAACGAGAGTTTGGAACCTTCTGATGGGTAAAGCAGCTGACCCTGTAGATGGA
AC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26665.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis