Browse Element(s) Details


Os.15514.1.S2_at

Description gb:AK069373.1
DB_XREF= gi:32979397
TID=Os.15514.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15514 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013124C24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012O12, full insert sequence.
FL= gb:AK099953.1 gb:AK069373.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3740011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37360OsAffx.27208.1.S1_at11/115+21774732..21775010hypothetical protein
LOC_Os05g37370NANA5+21781235..21781789retrotransposon protein, putative, unclassified
LOC_Os05g37380NANA5+21782334..21788489retrotransposon protein, putative, unclassified
LOC_Os05g37390Os.18982.1.S1_at11/115+21792752..21795268G10 protein homolog, putative, expressed
LOC_Os05g37400Os.15514.1.S1_at11/115+21798628..21805868expressed protein
LOC_Os05g37400Os.15514.1.S2_at11/115+21798628..21805868expressed protein
LOC_Os05g37410Os.26665.1.S1_x_at11/115+21803108..21813723HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g37410OsAffx.14993.1.S1_x_at10/115+21803108..21813723HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g37410Os.53059.1.S1_x_at7/115+21803108..21813723HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g37410OsAffx.14993.1.S1_at4/115+21803108..21813723HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g37420OsAffx.4545.1.S1_at11/115+21815586..21816504expressed protein
LOC_Os05g37434Os.18844.1.S1_at11/115+21820047..21828143Arginine-tRNA-protein transferase, C terminus containing protein, expressed
LOC_Os05g37434OsAffx.27209.1.S1_at11/115+21820047..21828143Arginine-tRNA-protein transferase, C terminus containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15514.1.S2_at--532--6592Chr05:21805268..21805292 (25 bp)
GATTGCAGCACGGTTTTGGTGCCTC
LOC_Os05g37400
Os.15514.1.S2_at--1085--4312Chr05:21805293..21805317 (25 bp)
CCTTGTGTCCTTTAGTTCATCTGCA
LOC_Os05g37400
Os.15514.1.S2_at--336--6972Chr05:21805320..21805344 (25 bp)
GTAGCCACATGACTCGACGAAAACC
LOC_Os05g37400
Os.15514.1.S2_at--483--3412Chr05:21805344..21805368 (25 bp)
CAGCACACACACACGGACAGTTATA
LOC_Os05g37400
Os.15514.1.S2_at--630--2412Chr05:21805378..21805402 (25 bp)
AAAAATGCACTTGCCTGGTGTCCAT
LOC_Os05g37400
Os.15514.1.S2_at--764--8612Chr05:21805393..21805417 (25 bp)
TGGTGTCCATATGGCCAACAGGTAA
LOC_Os05g37400
Os.15514.1.S2_at--427--2932Chr05:21805416..21805440 (25 bp)
AAGGACTTGGATCATCAGGCTCCCG
LOC_Os05g37400
Os.15514.1.S2_at--926--4192Chr05:21805437..21805461 (25 bp)
CCCGTTGGTCGAGTGCTAGCTGTAA
LOC_Os05g37400
Os.15514.1.S2_at--744--6232Chr05:21805507..21805531 (25 bp)
GATGGCACAATTTCTCATGGTCTCA
LOC_Os05g37400
Os.15514.1.S2_at--182--3512Chr05:21805522..21805546 (25 bp)
CATGGTCTCACCTGTTGCATGAGGG
LOC_Os05g37400
Os.15514.1.S2_at--844--7412Chr05:21805722..21805746 (25 bp)
GTGTTCTGTCCGAAGTCTATGCACA
LOC_Os05g37400
Target Sequence 
GATTGCAGCACGGTTTTGGTGCCTCCCTTGTGTCCTTTAGTTCATCTGCANAGTAGCCACATGACTCGACGAAAACCAGC
ACACACACACGGACAGTTATAAATTTAAAGAAAAATGCACTTGCCTGGTGTCCATATGGCCAACAGGTAAGGACTTGGAT
CATCAGGCTCCCGTTGGTCGAGTGCTAGCTGTAAGATCATTTGCAATCAGAAATAATATCTTGAAGTGTTTTAAAGAAAG
ATGGCACAATTTCTCATGGTCTCACCTGTTGCATGAGGGGATGTGAATCTGGAAGTTCATAACTGCGAGCAGAACCTTAA
GTCAGTAATAGAAATTAAAAAATATTTTGTTCAGGATGTATAGAATTACTTAGATGGTGGGCTCTATAATAAATGTAAGT
TTAAACAGGTATATGTTCAAGCTAAATAAAATATCAGTTCAACACTTACACATAGTGTTCTGTCCGAAGTCTATGCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15514.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis