Browse Element(s) Details


OsAffx.4545.1.S1_at

Description tigr:9633.m03456
TID=OsAffx.4545.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3742011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37390Os.18982.1.S1_at11/115+21792752..21795268G10 protein homolog, putative, expressed
LOC_Os05g37400Os.15514.1.S1_at11/115+21798628..21805868expressed protein
LOC_Os05g37400Os.15514.1.S2_at11/115+21798628..21805868expressed protein
LOC_Os05g37410Os.26665.1.S1_x_at11/115+21803108..21813723HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g37410OsAffx.14993.1.S1_x_at10/115+21803108..21813723HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g37410Os.53059.1.S1_x_at7/115+21803108..21813723HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g37410OsAffx.14993.1.S1_at4/115+21803108..21813723HhH-GPD superfamily base excision DNA repair protein, expressed
LOC_Os05g37420OsAffx.4545.1.S1_at11/115+21815586..21816504expressed protein
LOC_Os05g37434Os.18844.1.S1_at11/115+21820047..21828143Arginine-tRNA-protein transferase, C terminus containing protein, expressed
LOC_Os05g37434OsAffx.27209.1.S1_at11/115+21820047..21828143Arginine-tRNA-protein transferase, C terminus containing protein, expressed
LOC_Os05g37450Os.54080.1.S1_at11/115+21831690..21834195Starch binding domain containing protein, expressed
LOC_Os05g37460Os.12682.1.S1_at11/115+21836751..21837732expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4545.1.S1_at--770--10671Chr05:21816396..21816420 (25 bp)
TTCCACTTTCTCTACTCGAAGGTAG
LOC_Os05g37420
OsAffx.4545.1.S1_at--566--8611Chr05:21816347..21816371 (25 bp)
TGGTGGTTCTTGGTGACGACAACCC
LOC_Os05g37420
OsAffx.4545.1.S1_at--700--1851Chr05:21816332..21816356 (25 bp)
ACGACAACCCCGAGGATGGAGTGGA
LOC_Os05g37420
OsAffx.4545.1.S1_at--35--1051Chr05:21816283..21816307 (25 bp)
AGGTGACTTTGCTGGTGTATATCGA
LOC_Os05g37420
OsAffx.4545.1.S1_at--799--10131Chr05:21816264..21816288 (25 bp)
TATCGAGGTGAACTCCGAGGATCTA
LOC_Os05g37420
OsAffx.4545.1.S1_at--1121--10171Chr05:21816223..21816247 (25 bp)
TATACGGCGATCGAGGATACCTAGC
LOC_Os05g37420
OsAffx.4545.1.S1_at--897--3711Chr05:21816203..21816227 (25 bp)
CTAGCGACGGTTGCAGAGACCTCAA
LOC_Os05g37420
OsAffx.4545.1.S1_at--801--7351Chr05:21816159..21816183 (25 bp)
GTGAACGGAGCTGTCAGTCGCTACT
LOC_Os05g37420
OsAffx.4545.1.S1_at--171--1151Chr05:21816144..21816168 (25 bp)
AGTCGCTACTCATTCTCATCATTTT
LOC_Os05g37420
OsAffx.4545.1.S1_at--67--9531Chr05:21816131..21816155 (25 bp)
TCTCATCATTTTCTCGTCGCGGCAG
LOC_Os05g37420
OsAffx.4545.1.S1_at--863--9331Chr05:21816115..21816139 (25 bp)
TCGCGGCAGGTTGATAAGTCGTCTC
LOC_Os05g37420
Target Sequence 
TTCCACTTTCTCTACTCGAAGGTAGCTTGGGGCCGACGACACTTGAAGGTGGTGGTTCTTGGTGACGACAACCCCGAGGA
TGGAGTGGAAGTGTGCGCTCCGCGACCTCGAGAAGGTGACTTTGCTGGTGTATATCGAGGTGAACTCCGAGGATCTAGTG
GAGAAAGCCAAGATATACGGCGATCGAGGATACCTAGCGACGGTTGCAGAGACCTCAACGGAGTTGAGCAAGTCAAGGTG
AACGGAGCTGTCAGTCGCTACTCATTCTCATCATTTTCTCGTCGCGGCAGGTTGATAAGTCGTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4545.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis