Browse Element(s) Details


Os.12475.1.S1_s_at

Description gb:AA753676
DB_XREF= gi:2800456
DB_XREF=97BS0166
CLONE=97BS0166
TID=Os.12475.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.12475 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3747011/11AUX1-like permease, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37434Os.18844.1.S1_at11/115+21820047..21828143Arginine-tRNA-protein transferase, C terminus containing protein, expressed
LOC_Os05g37434OsAffx.27209.1.S1_at11/115+21820047..21828143Arginine-tRNA-protein transferase, C terminus containing protein, expressed
LOC_Os05g37450Os.54080.1.S1_at11/115+21831690..21834195Starch binding domain containing protein, expressed
LOC_Os05g37460Os.12682.1.S1_at11/115+21836751..21837732expressed protein
LOC_Os05g37470Os.12475.1.S1_s_at11/115+21843682..21848856AUX1-like permease, putative, expressed
LOC_Os05g37470OsAffx.7026.1.S1_x_at2/115+21843682..21848856AUX1-like permease, putative, expressed
LOC_Os05g37480OsAffx.14994.1.S1_at11/115+21851282..21853570hypothetical protein
LOC_Os05g37490NANA5+21855832..21856146hypothetical protein
LOC_Os05g37500Os.12591.1.S1_at11/115+21859888..21876601expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0009723biological_processresponse to ethylene stimulus
GO:0009733biological_processresponse to auxin stimulus
GO:0009958biological_processpositive gravitropism
GO:0009928cellular_componentcell surface (sensu Magnoliophyta)
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12475.1.S1_s_at--2--7131Chr05:21843947..21843971 (25 bp)
GTCTTGCCTTTGTGTAGTAGGACAG
LOC_Os05g37470
Os.12475.1.S1_s_at--363--2151Chr05:21843926..21843950 (25 bp)
ACAGCAGGTCAGCAGCATACATGGT
LOC_Os05g37470
Os.12475.1.S1_s_at--1110--3391Chr05:21843914..21843938 (25 bp)
CAGCATACATGGTAGGACAGCGCGT
LOC_Os05g37470
Os.12475.1.S1_s_at--1058--5631Chr05:21843899..21843923 (25 bp)
GACAGCGCGTGGGTCACTGACTAGA
LOC_Os05g37470
Os.12475.1.S1_s_at--1044--8931Chr05:21843882..21843906 (25 bp)
TGACTAGATTTACCGCCCTGCAGGG
LOC_Os05g37470
Os.12475.1.S1_s_at--1139--3691Chr05:21843851..21843875 (25 bp)
CTATGCTGCGGAGTCTTCAGTTCAT
LOC_Os05g37470
Os.12475.1.S1_s_at--778--3651Chr05:21843837..21843861 (25 bp)
CTTCAGTTCATGTGTGTTGTTGGCA
LOC_Os05g37470
Os.12475.1.S1_s_at--158--6631Chr05:21843822..21843846 (25 bp)
GTTGTTGGCAACTTTGCGTCGTCCT
LOC_Os05g37470
Os.12475.1.S1_s_at--272--4651Chr05:21843807..21843831 (25 bp)
GCGTCGTCCTCTTTTGTTTGGGAGT
LOC_Os05g37470
Os.12475.1.S1_s_at--737--10771Chr05:21843771..21843795 (25 bp)
TTGGTCGTAATTTGTAGGTTCTTCT
LOC_Os05g37470
Os.12475.1.S1_s_at--713--1011Chr05:21843756..21843780 (25 bp)
AGGTTCTTCTGTTCATGTTACATGC
LOC_Os05g37470
Target Sequence 
GTCTTGCCTTTGTGTAGTAGGACAGCAGGTCAGCAGCATACATGGTAGGACAGCGCGTGGGTCACTGACTAGATTTACCG
CCCTGCAGGGGCTTCCCTATGCTGCGGAGTCTTCAGTTCATGTGTGTTGTTGGCAACTTTGCGTCGTCCTCTTTTGTTTG
GGAGTTGGATGTGAACTTGGTCGTAATTTGTAGGTTCTTCTGTTCATGTTACATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12475.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis