Browse Element(s) Details


Os.12591.1.S1_at

Description gb:AK073964.1
DB_XREF= gi:32983987
TID=Os.12591.1
CNT=119
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12591 (NCBI UniGene Cluster)
UG_TITLE=O. sativa mRNA for alcohol dehydrogenase 1
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033073H15, full insert sequence.
FL= gb:AK073964.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3750011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37460Os.12682.1.S1_at11/115+21836751..21837732expressed protein
LOC_Os05g37470Os.12475.1.S1_s_at11/115+21843682..21848856AUX1-like permease, putative, expressed
LOC_Os05g37470OsAffx.7026.1.S1_x_at2/115+21843682..21848856AUX1-like permease, putative, expressed
LOC_Os05g37480OsAffx.14994.1.S1_at11/115+21851282..21853570hypothetical protein
LOC_Os05g37490NANA5+21855832..21856146hypothetical protein
LOC_Os05g37500Os.12591.1.S1_at11/115+21859888..21876601expressed protein
LOC_Os05g37510OsAffx.27210.1.S1_at11/115+21878353..21878709hypothetical protein
LOC_Os05g37520Os.8774.1.S1_at11/115+21880609..21882818expressed protein
LOC_Os05g37530NANA5+21887198..21887998expressed protein
LOC_Os05g37540Os.45774.1.S1_at9/115+21892251..21896203transposon protein, putative, unclassified
LOC_Os05g37550OsAffx.31018.3.S1_x_at11/115+21896902..21901449hypothetical protein
LOC_Os05g37550OsAffx.31018.2.S1_x_at11/115+21896902..21901449hypothetical protein
LOC_Os05g37550Os.50578.1.S1_x_at7/115+21896902..21901449hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12591.1.S1_at--354--951Chr05:21860411..21860435 (25 bp)
AGGAAGCAGCAGGTCGTGATCATGA
LOC_Os05g37500
Os.12591.1.S1_at--19--9211Chr05:21860345..21860369 (25 bp)
TCCACTCCCTTTCATGGATGACAGT
LOC_Os05g37500
Os.12591.1.S1_at--37--7991Chr05:21860330..21860354 (25 bp)
GGATGACAGTGAGCCCGGTGTACAT
LOC_Os05g37500
Os.12591.1.S1_at--666--831Chr05:21860307..21860331 (25 bp)
ATGGAGAGACGAAGCGCCCTGCCGT
LOC_Os05g37500
Os.12591.1.S1_at--884--811Chr05:21860271..21860295 (25 bp)
ATGGTCCTTCGCTTGAGGAGACTTC
LOC_Os05g37500
Os.12591.1.S1_at--50--8071Chr05:21860255..21860279 (25 bp)
GGAGACTTCTGCATTACGCTGATCG
LOC_Os05g37500
Os.12591.1.S1_at--128--9511Chr05:21860166..21860190 (25 bp)
TCTCATGTAGCTTTCACCACAGGAA
LOC_Os05g37500
Os.12591.1.S1_at--719--4732Chr05:27645558..27645582 (25 bp)
GCTGAAACCGTTGTCTGTATGTATA
NONE
Os.12591.1.S1_at--1001--6131Chr05:21860083..21860107 (25 bp)
GAGGGTCACATTGACGAGCTCTCTA
LOC_Os05g37500
Os.12591.1.S1_at--1057--4531Chr05:21860058..21860082 (25 bp)
GCCCGATTTTGCCTTGTTAGTGGAT
LOC_Os05g37500
Os.12591.1.S1_at--675--4111Chr05:21859975..21859999 (25 bp)
CCCAGGGCCAGGACCAAGTTGTAAT
LOC_Os05g37500
Target Sequence 
AGGAAGCAGCAGGTCGTGATCATGAGACGGAGATGCACAACGTGTTGGAAGCAGTGGCTGCCGAGCTCCACTCCCTTTCA
TGGATGACAGTGAGCCCGGTGTACATGGAGAGACGAAGCGCCCTGCCGTCCCACTGTGATATGGTCCTTCGCTTGAGGAG
ACTTCTGCATTACGCTGATCGGCATCTCTCCCAATCGACAGAGAAAGGAGATGTAGCTTAGAGACTACTAGAGAGGACAA
CTAATTCTCATGTAGCTTTCACCACAGGAAAAATAAGGGCTTAGATGATGCTGAAACCGTTGTCTGTATGTATATTAGGC
AGGTAGATGAGGGTCACATTGACGAGCTCTCTAGCCCGATTTTGCCTTGTTAGTGGATTGAAGAGAATGCTAATTTCTTG
GGCTGAGGATGTAATTACGTGCGCATCGACACCTCTCCCAGGGCCAGGACCAAGTTGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12591.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis