Browse Element(s) Details


Os.8774.1.S1_at

Description gb:AK071331.1
DB_XREF= gi:32981354
TID=Os.8774.1
CNT=14
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.8774 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013129M13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023089C14, full insert sequence.
FL= gb:AK072154.1 gb:AK071331.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3752011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37490NANA5+21855832..21856146hypothetical protein
LOC_Os05g37500Os.12591.1.S1_at11/115+21859888..21876601expressed protein
LOC_Os05g37510OsAffx.27210.1.S1_at11/115+21878353..21878709hypothetical protein
LOC_Os05g37520Os.8774.1.S1_at11/115+21880609..21882818expressed protein
LOC_Os05g37530NANA5+21887198..21887998expressed protein
LOC_Os05g37540Os.45774.1.S1_at9/115+21892251..21896203transposon protein, putative, unclassified
LOC_Os05g37550OsAffx.31018.3.S1_x_at11/115+21896902..21901449hypothetical protein
LOC_Os05g37550OsAffx.31018.2.S1_x_at11/115+21896902..21901449hypothetical protein
LOC_Os05g37550Os.50578.1.S1_x_at7/115+21896902..21901449hypothetical protein
LOC_Os05g37560NANA5+21902727..21904076hypothetical protein
LOC_Os05g37570Os.47130.4.A1_x_at4/115+21904606..21904887retrotransposon protein, putative, unclassified
LOC_Os05g37580Os.28943.1.S1_x_at1/115+21905798..21909014retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8774.1.S1_at--245--191Chr05:21881178..21881202 (25 bp)
ATTTCCTCTGGAACACCGGAGGTGA
LOC_Os05g37520
Os.8774.1.S1_at--625--3951Chr05:21881162..21881186 (25 bp)
CGGAGGTGAGGACACATGTTTCCCC
LOC_Os05g37520
Os.8774.1.S1_at--850--2451Chr05:21881113..21881137 (25 bp)
AACAATGGCCACTCGAAATCAGACA
LOC_Os05g37520
Os.8774.1.S1_at--872--1451Chr05:21881048..21881072 (25 bp)
AGAAGTCCAGTTCGTGCAGCATGCG
LOC_Os05g37520
Os.8774.1.S1_at--966--8371Chr05:21881008..21881032 (25 bp)
GGCGAGACGCCTAGAGCACACGACG
LOC_Os05g37520
Os.8774.1.S1_at--104--3711Chr05:21880998..21881022 (25 bp)
CTAGAGCACACGACGACATGGGCGG
LOC_Os05g37520
Os.8774.1.S1_at--1112--7511Chr05:21880969..21880993 (25 bp)
GTGGAGCTGACGCATGATGCCTTCC
LOC_Os05g37520
Os.8774.1.S1_at--602--6351Chr05:21880954..21880978 (25 bp)
GATGCCTTCCGTTTACTTAGGTAGG
LOC_Os05g37520
Os.8774.1.S1_at--145--2191Chr05:21880838..21880862 (25 bp)
ACAAATCCGGCGACGGGAGCATTTC
LOC_Os05g37520
Os.8774.1.S1_at--122--7991Chr05:21880784..21880808 (25 bp)
GGATGCAAGCTCATTTCCCGACGAT
LOC_Os05g37520
Os.8774.1.S1_at--880--10011Chr05:21880716..21880740 (25 bp)
TAGCAACTTGCGTCCTGTAATTATG
LOC_Os05g37520
Target Sequence 
ATTTCCTCTGGAACACCGGAGGTGAGGACACATGTTTCCCCCTCGATTGACGCGGCCACCGGCACAACAATGGCCACTCG
AAATCAGACAGAAAATTAGGAAGCGGAAAAAAAAAAGAATCTCTATTCAAAGAAGTCCAGTTCGTGCAGCATGCGCGGGG
GCGGCCACGCGGCGAGACGCCTAGAGCACACGACGACATGGGCGGCGGAGTGGAGCTGACGCATGATGCCTTCCGTTTAC
TTAGGTAGGTTGAGTAGAGGTGTGCGTGGGCAGTGGAGTGAGTTGTGAGCTTGTGAGTTGTGTGATACGGGAGAGCGCGC
GGTGCCGCTTCTCCCGTTCCACAAATCCGGCGACGGGAGCATTTCGCCGGGAATGAGGAAGAGGACGGATACGGGGATGC
AAGCTCATTTCCCGACGATCTTGTCGGCAGGGGTACGGTGGCGTGGATGGATGGATGGNGTATAGCAACTTGCGTCCTGT
AATTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8774.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis