Browse Element(s) Details


Os.27858.1.S1_at

Description gb:AK058462.1
DB_XREF= gi:32968480
TID=Os.27858.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27858 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ABC transporter (P0470A12.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-016-A04, full insert sequence.
FL= gb:AK058462.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6833011/11ABC transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68279NANA1+40005305..40006009NA
LOC_Os01g68290Os.42784.1.S1_at8/111+40006399..40006953expressed protein
LOC_Os01g68300Os.11975.2.A1_at11/111+40009684..40010287expressed protein
LOC_Os01g68310Os.11975.1.S1_at11/111+40011433..40014161expressed protein
LOC_Os01g68320Os.12967.1.A1_a_at11/111+40015110..40020008ATP-dependent RNA helicase DBP2, putative, expressed
LOC_Os01g68320Os.12967.4.S1_x_at11/111+40015110..40020008ATP-dependent RNA helicase DBP2, putative, expressed
LOC_Os01g68324Os.9998.2.S1_x_at11/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68324Os.9998.1.S1_at11/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68324OsAffx.24206.1.S1_at1/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68324OsAffx.24206.2.S1_s_at1/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68330Os.27858.1.S1_at11/111+40030156..40034899ABC transporter family protein, expressed
LOC_Os01g68330Os.27858.2.S1_x_at11/111+40030156..40034899ABC transporter family protein, expressed
LOC_Os01g68340NANA1+40037705..40039761retrotransposon protein, putative, unclassified
LOC_Os01g68350OsAffx.20387.1.S1_x_at1/111+40040578..40044471retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g68359NANA1+40050018..40050158NA
LOC_Os01g68370Os.7360.1.S1_a_at11/111+40050020..40053833Viviparous protein homolog, putative, expressed
LOC_Os01g68380Os.12849.2.S1_x_at11/111+40057147..40063666dentin sialophosphoprotein, putative, expressed
LOC_Os01g68380Os.12849.1.S1_at11/111+40057147..40063666dentin sialophosphoprotein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27858.1.S1_at--100--1831Chr01:40030658..40030682 (25 bp)
ACGCCCTCGATTAGTCCTGAATTCA
LOC_Os01g68330
Os.27858.1.S1_at--444--7251Chr01:40030645..40030669 (25 bp)
GTCCTGAATTCACAGAGATTGGTCT
LOC_Os01g68330
Os.27858.1.S1_at--229--1251Chr01:40030630..40030654 (25 bp)
AGATTGGTCTACTCCACACCATTTT
LOC_Os01g68330
Os.27858.1.S1_at--570--10351Chr01:40030607..40030631 (25 bp)
TTTTTTCAAGTGGAACGGCAGGCAA
LOC_Os01g68330
Os.27858.1.S1_at--628--8771Chr01:40030562..40030586 (25 bp)
TGTATTCTTTACGAGTGACCCTGAC
LOC_Os01g68330
Os.27858.1.S1_at--237--7951Chr01:40030438..40030462 (25 bp)
GGATCCGGGAACCTGTAACTGCAAA
LOC_Os01g68330
Os.27858.1.S1_at--386--3491Chr01:40030376..40030400 (25 bp)
CAGGCGCAACCTGTAATACAAATGT
LOC_Os01g68330
Os.27858.1.S1_at--655--6811Chr01:40030289..40030313 (25 bp)
GTTTACTCCAGTTTTGACAATTTGC
LOC_Os01g68330
Os.27858.1.S1_at--949--191Chr01:40030270..40030294 (25 bp)
ATTTGCATAGAGCATTACACTGTAT
LOC_Os01g68330
Os.27858.1.S1_at--773--211Chr01:40030218..40030242 (25 bp)
ATTTGTATACCTGTGTGACCGTGTC
LOC_Os01g68330
Os.27858.1.S1_at--1017--5811Chr01:40030202..40030226 (25 bp)
GACCGTGTCACGATAAACAGACATT
LOC_Os01g68330
Target Sequence 
ACGCCCTCGATTAGTCCTGAATTCACAGAGATTGGTCTACTCCACACCATTTTTTTTCAAGTGGAACGGCAGGCAAGGAG
AGTTCTTAGTAATTGGTGTATTCTTTACGAGTGACCCTGACCGTGGTGGCCAAACAGGTGAAACTGGATAGTTTACAAAT
GATGATAACTAATCAAACTAAGAAGTTGTTTCCCACCATAAAACGGGTCGGTAGTATGGAGGATCCGGGAACCTGTAACT
GCAAATGATTCTTTACAGAAGTCAAATAGTTATACATGTCATCAGGCGCAACCTGTAATACAAATGTATAGGCATTCTGA
TCAGAGTCAAGACCATCGGAAATCATAACTTATATACTCTGCAGGGAAAGTTTACTCCAGTTTTGACAATTTGCATAGAG
CATTACACTGTATACTTATTTCTCAAATTGTATACNNACAATTTGTATACCTGTGTGACCGTGTCACGATAAACAGACAT
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27858.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis