Browse Element(s) Details


Os.12849.2.S1_x_at

Description gb:AY224586.1
DB_XREF= gi:29371976
TID=Os.12849.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.12849 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0470A12.13 (P0470A12.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) isolate 31086 heavy meromyosin-like protein mRNA, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6838011/11dentin sialophosphoprotein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68330Os.27858.1.S1_at11/111+40030156..40034899ABC transporter family protein, expressed
LOC_Os01g68330Os.27858.2.S1_x_at11/111+40030156..40034899ABC transporter family protein, expressed
LOC_Os01g68340NANA1+40037705..40039761retrotransposon protein, putative, unclassified
LOC_Os01g68350OsAffx.20387.1.S1_x_at1/111+40040578..40044471retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g68359NANA1+40050018..40050158NA
LOC_Os01g68370Os.7360.1.S1_a_at11/111+40050020..40053833Viviparous protein homolog, putative, expressed
LOC_Os01g68380Os.12849.2.S1_x_at11/111+40057147..40063666dentin sialophosphoprotein, putative, expressed
LOC_Os01g68380Os.12849.1.S1_at11/111+40057147..40063666dentin sialophosphoprotein, putative, expressed
LOC_Os01g68390Os.39982.1.S1_at11/111+40063962..40068555Uncharacterized ACR, COG1565 family protein, expressed
LOC_Os01g68400NANA1+40069219..40069830hypothetical protein
LOC_Os01g68410OsAffx.22848.3.S1_x_at3/111+40077743..40083688retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12849.2.S1_x_at--881--1411Chr01:40062205..40062229 (25 bp)
AGAAACCCTTACCAGTGCCATTGAC
LOC_Os01g68380
Os.12849.2.S1_x_at--1070--5511Chr01:40062245..40062269 (25 bp)
GAAACATCTGTATCGCGGTCCAATA
LOC_Os01g68380
Os.12849.2.S1_x_at--21--5371Chr01:40062293..40062317 (25 bp)
GAAGAGGTGTCTTCTAGCATCCCAC
LOC_Os01g68380
Os.12849.2.S1_x_at--121--4991Chr01:40062309..40062333 (25 bp)
GCATCCCACATGATCAGCTTAGAAT
LOC_Os01g68380
Os.12849.2.S1_x_at--811--1631Chr01:40062526..40062550 (25 bp)
AGCGAGAAGAGTTGCTGCGAGCTTT
LOC_Os01g68380
Os.12849.2.S1_x_at--460--5251Chr01:40062558..40062582 (25 bp)
GAATCATCCAATTGCTCCAAGCTGA
LOC_Os01g68380
Os.12849.2.S1_x_at--957--4711Chr01:40062910..40062934 (25 bp)
GCTGGAGATTCAGACTCACAGACTT
LOC_Os01g68380
Os.12849.2.S1_x_at--53--4751Chr01:40062937..40062961 (25 bp)
GCTGTTATCTTCTCAAAGGATGGCT
LOC_Os01g68380
Os.12849.2.S1_x_at--951--1431Chr01:40062966..40062990 (25 bp)
AGAATGTCCTTCCAAAGCCGATCGA
LOC_Os01g68380
Os.12849.2.S1_x_at--263--531Chr01:40062986..40063010 (25 bp)
ATCGACACACGCTCCATCAATGATG
LOC_Os01g68380
Os.12849.2.S1_x_at--198--6471Chr01:40063270..40063294 (25 bp)
GATAATGAAGCTCTTCCCTGGTGGT
LOC_Os01g68380
Target Sequence 
AGAAACCCTTACCAGTGCCATTGACACAGTAGAAGATGGTGAAACATCTGTATCGCGGTCCAATAATGTGGCTGATTTTA
CTTATTTAGAAGAGGTGTCTTCTAGCATCCCACATGATCAGCTTAGAATGATCGACAATATCAACTCCTTGATGTCAGAG
TTGGCAGTGGAGCGAGAAGAGTTGCTGCGAGCTTTGAGAATTGAATCATCCAATTGCTCCAAGCTGAAGGAATTGAACAA
GGATCTAACGCAAAAGCTGGAGATTCAGACTCACAGACTTGAGCTGTTATCTTCTCAAAGGATGGCTAACGAGAATGTCC
TTCCAAAGCCGATCGACACACGCTCCATCAATGATGCAACTTTGTATGCTGATGAAGGAGATGAGGTTGTTGAACGGGTG
CTTGGATGGATAATGAAGCTCTTCCCTGGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12849.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis