Browse Element(s) Details


OsAffx.24206.1.S1_at

Description tigr:9630.m01102
TID=OsAffx.24206.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g121709/11hypothetical protein
LOC_Os01g683241/11Ribophorin II family protein, expressed
LOC_Os10g316101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12120Os.45957.4.S1_x_at5/112+6299213..6310619retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g12120Os.39411.1.A1_at1/112+6299213..6310619retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g12120Os.42235.1.S1_x_at1/112+6299213..6310619retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g12120Os.42235.1.S1_at1/112+6299213..6310619retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g12130OsAffx.24204.1.S1_at11/112+6311211..6313776Protein kinase domain containing protein, expressed
LOC_Os02g12140Os.53895.1.S1_at1/112+6314997..6318062hypothetical protein
LOC_Os02g12150Os.7007.1.S1_at11/112+6321091..6322164expressed protein
LOC_Os02g12159NANA2+6323930..6324298NA
LOC_Os02g12170OsAffx.24206.2.S1_s_at11/112+6325077..6326357hypothetical protein
LOC_Os02g12170OsAffx.24206.1.S1_at9/112+6325077..6326357hypothetical protein
LOC_Os02g12170OsAffx.24206.2.S1_at2/112+6325077..6326357hypothetical protein
LOC_Os02g12180NANA2+6328023..6328687hypothetical protein
LOC_Os02g12189NANA2+6336412..6336837NA
LOC_Os02g12200OsAffx.12711.2.S1_x_at3/112+6341456..6344410Kinesin heavy chain, putative
LOC_Os02g12200OsAffx.12711.4.S1_at2/112+6341456..6344410Kinesin heavy chain, putative
LOC_Os02g12210OsAffx.12711.3.S1_at9/112+6344742..6347227expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006496biological_processprotein amino acid terminal N-glycosylation
GO:0005789cellular_componentendoplasmic reticulum membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24206.1.S1_at--161--8111Chr02:6326244..6326268 (25 bp)
GGACCGGATAAGACATTGGACCTTT
LOC_Os02g12170
OsAffx.24206.1.S1_at--855--1031Chr02:6326181..6326205 (25 bp)
AGGTCGCGCGACTTGCCCTGGCAAG
LOC_Os02g12170
OsAffx.24206.1.S1_at--538--9271NONE
TCCTGCATCGCTACTTGCCATGGAC
NONE
OsAffx.24206.1.S1_at--192--10631NONE
TTGCCATGGACACCCCAAAATCGTG
NONE
OsAffx.24206.1.S1_at--63--8751Chr02:6325597..6325621 (25 bp)
TGTAATTGGCTATGGGACACCGCAA
LOC_Os02g12170
OsAffx.24206.1.S1_at--102--8653Chr05:21746638..21746662 (25 bp)
TGGGACACCGCAAAATCTTGGCTTT
NONE
OsAffx.24206.1.S1_at--259--24510Chr08:8059226..8059250 (25 bp)
AAAATCTTGGCTTTGCCCACGGACA
NONE
OsAffx.24206.1.S1_at--289--10298Chr10:16236038..16236060 (23 bp)
TTTGCCCACGGACACTACGAAAGTT
LOC_Os10g31610
OsAffx.24206.1.S1_at--13--3193Chr01:37340652..37340676 (25 bp)
AATTGGCTGTGAGACACCAGAGGCA
NONE
OsAffx.24206.1.S1_at--1100--5635Chr10:14136665..14136688 (24 bp)
GACACCAGAGGCAATATTTTATAAT
NONE
OsAffx.24206.1.S1_at--39--3117Chr08:8059300..8059478 (25 bp)
AATTTCCGAGGCAAAAGAGGCGACG
NONE
Target Sequence 
GGACCGGATAAGACATTGGACCTTTGGTGTCGGCAGAGTAGCCGCGAGCCCACGATGCGAAGGAGGTCGCGCGACTTGCC
CTGGCAAGGTCGCCCTCCTGCATCGCTACTTGCCATGGACACCCCAAAATCGTGTAATTGGCTATGGGACACCGCAAAAT
CTTGGCTTTGCCCACGGACACTACGAAAGTTGTGAAATTGGCTGTGAGACACCAGAGGCAATATTTTATAATTTCCGAGG
CAAAAGAGGCGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24206.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis