Browse Element(s) Details


OsAffx.12711.3.S1_at

Description tigr:9630.m01106
TID=OsAffx.12711.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g122109/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12150Os.7007.1.S1_at11/112+6321091..6322164expressed protein
LOC_Os02g12159NANA2+6323930..6324298NA
LOC_Os02g12170OsAffx.24206.2.S1_s_at11/112+6325077..6326357hypothetical protein
LOC_Os02g12170OsAffx.24206.1.S1_at9/112+6325077..6326357hypothetical protein
LOC_Os02g12170OsAffx.24206.2.S1_at2/112+6325077..6326357hypothetical protein
LOC_Os02g12180NANA2+6328023..6328687hypothetical protein
LOC_Os02g12189NANA2+6336412..6336837NA
LOC_Os02g12200OsAffx.12711.2.S1_x_at3/112+6341456..6344410Kinesin heavy chain, putative
LOC_Os02g12200OsAffx.12711.4.S1_at2/112+6341456..6344410Kinesin heavy chain, putative
LOC_Os02g12210OsAffx.12711.3.S1_at9/112+6344742..6347227expressed protein
LOC_Os02g12220NANA2+6366274..6369534retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12711.3.S1_at--493--8972Chr02:23936255..23936279 (25 bp)
TGAACCGGTTTGACATTCACAACGG
NONE
OsAffx.12711.3.S1_at--419--3893Chr02:23936294..23936318 (25 bp)
CTGGATCTGCACATGACGGAGTTGA
NONE
OsAffx.12711.3.S1_at--1056--6371NONE
GATCCGATGACGAAGTGCACCAGAT
NONE
OsAffx.12711.3.S1_at--292--9151Chr02:6346264..6346288 (25 bp)
TGCGAGGCGGCCACAGGTTGAAAAA
LOC_Os02g12210
OsAffx.12711.3.S1_at--387--7911NONE
GGTTGTGGTCAGTAGCAGAGCTCAT
NONE
OsAffx.12711.3.S1_at--381--6433Chr02:6345032..6345056 (25 bp)
GATCTTGCTAATCTGGCAATCCCCA
LOC_Os02g12210
OsAffx.12711.3.S1_at--116--4894Chr02:23938005..23938029 (25 bp)
GCTTTGTGGCTGACCATGTCGTTAA
NONE
OsAffx.12711.3.S1_at--629--7193Chr02:23938022..23938046 (25 bp)
GTCGTTAATTCACATTCACTGCCTT
NONE
OsAffx.12711.3.S1_at--258--131Chr02:6344968..6344992 (25 bp)
ATTCACTGCCTTGCAAAGCGTGGGC
LOC_Os02g12210
OsAffx.12711.3.S1_at--396--7492Chr02:6344949..6344973 (25 bp)
GTGGGCACCACTATGGCTGCAACAG
LOC_Os02g12210
OsAffx.12711.3.S1_at--2--5471Chr02:6344784..6344808 (25 bp)
GAACGGTACAAAAGCTCCCTGCAGT
LOC_Os02g12210
Target Sequence 
TGAACCGGTTTGACATTCACAACGGTGACGCACCGTGCGCTGGATCTGCACATGACGGAGTTGAGGAGGAAGATCCGATG
ACGAAGTGCACCAGATCTGCGAGGCGGCCACAGGTTGAAAAATATAGTCAGTACAGGTTGTGGTCAGTAGCAGAGCTCAT
AAAAAACAACACAGTAAAACAATATGCCAAGACACTAAAATGGATTGGAAAACAAGAAGATGTAGAGGAGGGGCTGCAAG
AAGTTACCAATGAAACTGATCTTGCTAATCTGGCAATCCCCAAGCAGACCTGCTTTGTGGCTGACCATGTCGTTAATTCA
CATTCACTGCCTTGCAAAGCGTGGGCACCACTATGGCTGCAACAGTCATGGTCGTCCCTTGGGAGCAGGGACAGCTGGGC
CCTGCCGACGGCGCCGGCACCCCTTGCAGCGGCCAAGCCTGCAGTACCAGCCGATGCCCTCGCCAGCACAGGAAGACCAT
GCGAGCAGCCCATATTCGTGGAGTTGAACGGTACAAAAGCTCCCTGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12711.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis