Browse Element(s) Details


Os.7007.1.S1_at

Description gb:AK062445.1
DB_XREF= gi:32972463
TID=Os.7007.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7007 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-103-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-B04, full insert sequence.
FL= gb:AK062445.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1215011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12110NANA2+6298111..6298881retrotransposon protein, putative, unclassified
LOC_Os02g12120Os.45957.4.S1_x_at5/112+6299213..6310619retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g12120Os.39411.1.A1_at1/112+6299213..6310619retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g12120Os.42235.1.S1_x_at1/112+6299213..6310619retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g12120Os.42235.1.S1_at1/112+6299213..6310619retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g12130OsAffx.24204.1.S1_at11/112+6311211..6313776Protein kinase domain containing protein, expressed
LOC_Os02g12140Os.53895.1.S1_at1/112+6314997..6318062hypothetical protein
LOC_Os02g12150Os.7007.1.S1_at11/112+6321091..6322164expressed protein
LOC_Os02g12159NANA2+6323930..6324298NA
LOC_Os02g12170OsAffx.24206.2.S1_s_at11/112+6325077..6326357hypothetical protein
LOC_Os02g12170OsAffx.24206.1.S1_at9/112+6325077..6326357hypothetical protein
LOC_Os02g12170OsAffx.24206.2.S1_at2/112+6325077..6326357hypothetical protein
LOC_Os02g12180NANA2+6328023..6328687hypothetical protein
LOC_Os02g12189NANA2+6336412..6336837NA
LOC_Os02g12200OsAffx.12711.2.S1_x_at3/112+6341456..6344410Kinesin heavy chain, putative
LOC_Os02g12200OsAffx.12711.4.S1_at2/112+6341456..6344410Kinesin heavy chain, putative
LOC_Os02g12210OsAffx.12711.3.S1_at9/112+6344742..6347227expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7007.1.S1_at--872--112Chr02:6322102..6322126 (25 bp)
ATTACAAGAGGGTGGCAGCTAGCTA
LOC_Os02g12150
Os.7007.1.S1_at--983--3392Chr02:6328683..6328707 (25 bp)
CAGCTAGCTAGTTAGGCCGGATGGC
NONE
Os.7007.1.S1_at--1107--1712Chr02:6328018..6328042 (25 bp)
ACCAGCAACGTCAGCCTTAATTAGT
NONE
Os.7007.1.S1_at--107--6751Chr02:6321336..6321360 (25 bp)
GTTATGGACTATCAACGACGTACGT
LOC_Os02g12150
Os.7007.1.S1_at--1075--5752Chr02:6327979..6328003 (25 bp)
GACGTACGTTCAGCATATATACTCT
NONE
Os.7007.1.S1_at--1116--10172Chr02:6321303..6321327 (25 bp)
TATACTCTGGTTGCAAACGTGTTAG
LOC_Os02g12150
Os.7007.1.S1_at--337--7431Chr02:6321285..6321309 (25 bp)
GTGTTAGTATGTACTCCACTCTGTA
LOC_Os02g12150
Os.7007.1.S1_at--161--4372Chr02:6321270..6321294 (25 bp)
CCACTCTGTAAGTTCGTTCCGATTT
LOC_Os02g12150
Os.7007.1.S1_at--646--1652Chr02:6321224..6321248 (25 bp)
AGCGCATTGTATTCTCAACTACTTG
LOC_Os02g12150
Os.7007.1.S1_at--743--2291Chr02:6321172..6321196 (25 bp)
AAATGTAGGGCCGAGCGATCAGATT
LOC_Os02g12150
Os.7007.1.S1_at--300--2251Chr02:6321092..6321116 (25 bp)
AAATTAATTACTGCCTCTCCTTTCA
LOC_Os02g12150
Target Sequence 
ATTACAAGAGGGTGGCAGCTAGCTAGTTAGGCCGGATGGCGCGGCTGCAGCGACGACGTCTGGTGCTGGCGCTCCTGCAG
CTCGCCGTGGCGCTCTGGTTGGCGGCTACCAGCGGCTGCTTCTGCCGCCAGCCGCCGAGTCCGATAGCCGGCGTCTCGTC
GCCGCCGATTCTGCCGGACGGCAACCGGCCACCGAAGTCGCCTCCAGCTCCCGCATCCGCACAACACATGAACCGCTCCT
TTCAGCCGGGCTGCCCGCCGGATTGCACCGACCAGCAACGTCAGCCTTAATTAGTTATGGACTATCAACGACGTACGTTC
AGCATATATACTCTGGTTGCAAACGTGTTAGTATGTACTCCACTCTGTAAGTTCGTTCCGATTTCAAATGTAATAATGCA
AATTTAGCGCATTGTATTCTCAACTACTTGTAAGTATAATTTCTATTTTACTAGTATAAATGTAGGGCCGAGCGATCAGA
TTGGTACATCTTCAAAAACAATATCCTAGACTTGATTAATTATATGTAAAAACGCTCAAATTAATTACTGCCTCTCCTTT
CA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7007.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis