Browse Element(s) Details


OsAffx.24204.1.S1_at

Description tigr:9630.m01098
TID=OsAffx.24204.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1213011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12110NANA2+6298111..6298881retrotransposon protein, putative, unclassified
LOC_Os02g12120Os.45957.4.S1_x_at5/112+6299213..6310619retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g12120Os.39411.1.A1_at1/112+6299213..6310619retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g12120Os.42235.1.S1_x_at1/112+6299213..6310619retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g12120Os.42235.1.S1_at1/112+6299213..6310619retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g12130OsAffx.24204.1.S1_at11/112+6311211..6313776Protein kinase domain containing protein, expressed
LOC_Os02g12140Os.53895.1.S1_at1/112+6314997..6318062hypothetical protein
LOC_Os02g12150Os.7007.1.S1_at11/112+6321091..6322164expressed protein
LOC_Os02g12159NANA2+6323930..6324298NA
LOC_Os02g12170OsAffx.24206.2.S1_s_at11/112+6325077..6326357hypothetical protein
LOC_Os02g12170OsAffx.24206.1.S1_at9/112+6325077..6326357hypothetical protein
LOC_Os02g12170OsAffx.24206.2.S1_at2/112+6325077..6326357hypothetical protein
LOC_Os02g12180NANA2+6328023..6328687hypothetical protein
LOC_Os02g12189NANA2+6336412..6336837NA

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0005529molecular_functionsugar binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24204.1.S1_at--451--2911Chr02:6312607..6312631 (25 bp)
AAGGTTGCATCTGGACTGGTCTACA
LOC_Os02g12130
OsAffx.24204.1.S1_at--891--7791Chr02:6312624..6312648 (25 bp)
GGTCTACACGCTCTCGGATAATTGA
LOC_Os02g12130
OsAffx.24204.1.S1_at--1051--4731Chr02:6312656..6312680 (25 bp)
GCTGAGGGACTGCTTTATCTCCATA
LOC_Os02g12130
OsAffx.24204.1.S1_at--214--2731Chr02:6312680..6312704 (25 bp)
AAGCACTGCGGACTACATATTGTAC
LOC_Os02g12130
OsAffx.24204.1.S1_at--497--3271Chr02:6312724..6312748 (25 bp)
CAACATTCTTCTGGACTCCAACATG
LOC_Os02g12130
OsAffx.24204.1.S1_at--70--2811Chr02:6312755..6312779 (25 bp)
AAGATCTCCGATTTTAGCCTGGCTA
LOC_Os02g12130
OsAffx.24204.1.S1_at--871--8571Chr02:6312935..6312959 (25 bp)
TGGTTTTATTGCTCCCGAATGTCGG
LOC_Os02g12130
OsAffx.24204.1.S1_at--235--5571Chr02:6312960..6312984 (25 bp)
GAAAGACGACTTTTCTCAACGAAGT
LOC_Os02g12130
OsAffx.24204.1.S1_at--1064--2351Chr02:6313031..6313055 (25 bp)
AAAGCGATGCTTTTCACTTGTGAGT
LOC_Os02g12130
OsAffx.24204.1.S1_at--466--5791Chr02:6313068..6313092 (25 bp)
GACGACTATCGATTTCTGAACAAGA
LOC_Os02g12130
OsAffx.24204.1.S1_at--604--1331Chr02:6313719..6313739 (21 bp)
AGAGGATCTGCATTCCATCTTTACC
LOC_Os02g12130
Target Sequence 
AAGGTTGCATCTGGACTGGTCTACACGCTCTCGGATAATTGATGGGATAGCTGAGGGACTGCTTTATCTCCATAAGCACT
GCGGACTACATATTGTACATGGAGATCTGAAGCCAAGCAACATTCTTCTGGACTCCAACATGAATCCCAAGATCTCCGAT
TTTAGCCTGGCTAGAAGGTATAGTCCAGGTGTAGATGAAGAGTACGCCGATCGCATACTGGGGTCAATTGGTTTTATTGC
TCCCGAATGTCGGGAAAGACGACTTTTCTCAACGAAGTCTGATGTGTATGGCTTTGGAGCATTGGTTCTCGAGATCATTA
GTGGAAAGCGATGCTTTTCACTTGTGAGTGGAGATTCTGGAGACGACTATCGATTTCTGAACAAGAGGATCTGCATTCCA
TCTTTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24204.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis