Browse Element(s) Details


Os.12967.1.A1_a_at

Description gb:AK062123.1
DB_XREF= gi:32972141
TID=Os.12967.1
CNT=11
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.12967 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative RNA helicase (P0470A12.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-045-D03, full insert sequence.
FL= gb:AK062123.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6832011/11ATP-dependent RNA helicase DBP2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68250OsAffx.23970.1.S1_at11/111+39989866..39992459expressed protein
LOC_Os01g68260Os.42786.1.A1_at9/111+39993504..39997516expressed protein
LOC_Os01g68270Os.33773.1.S1_at11/111+39997588..39999102expressed protein
LOC_Os01g68279NANA1+40005305..40006009NA
LOC_Os01g68290Os.42784.1.S1_at8/111+40006399..40006953expressed protein
LOC_Os01g68300Os.11975.2.A1_at11/111+40009684..40010287expressed protein
LOC_Os01g68310Os.11975.1.S1_at11/111+40011433..40014161expressed protein
LOC_Os01g68320Os.12967.1.A1_a_at11/111+40015110..40020008ATP-dependent RNA helicase DBP2, putative, expressed
LOC_Os01g68320Os.12967.4.S1_x_at11/111+40015110..40020008ATP-dependent RNA helicase DBP2, putative, expressed
LOC_Os01g68324Os.9998.2.S1_x_at11/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68324Os.9998.1.S1_at11/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68324OsAffx.24206.1.S1_at1/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68324OsAffx.24206.2.S1_s_at1/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68330Os.27858.1.S1_at11/111+40030156..40034899ABC transporter family protein, expressed
LOC_Os01g68330Os.27858.2.S1_x_at11/111+40030156..40034899ABC transporter family protein, expressed
LOC_Os01g68340NANA1+40037705..40039761retrotransposon protein, putative, unclassified
LOC_Os01g68350OsAffx.20387.1.S1_x_at1/111+40040578..40044471retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004004molecular_functionATP-dependent RNA helicase activity
GO:0008026molecular_functionATP-dependent helicase activity
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12967.1.A1_a_at--696--9771Chr01:40017210..40017234 (25 bp)
TAATGGCTGCCACAGATGTAGCGGC
LOC_Os01g68320
Os.12967.1.A1_a_at--614--1471Chr01:40015846..40015870 (25 bp)
AGAATAGGTCGAACTGGCCGCGCTG
LOC_Os01g68320
Os.12967.1.A1_a_at--703--1091Chr01:40015816..40015840 (25 bp)
AGTGGAACTGCATTCACCTTTTTCA
LOC_Os01g68320
Os.12967.1.A1_a_at--811--4331Chr01:40015736..40015760 (25 bp)
CCAGGTTGTGAATCCAGCGCTAGAA
LOC_Os01g68320
Os.12967.1.A1_a_at--316--791Chr01:40015603..40015711 (25 bp)
ATGGGAGGAGGCAATTTCCGGTCAA
LOC_Os01g68320
Os.12967.1.A1_a_at--466--7491Chr01:40015569..40015593 (25 bp)
GTGGGTTTGGTAACAGATCTGGCTC
LOC_Os01g68320
Os.12967.1.A1_a_at--257--6411Chr01:40015554..40015578 (25 bp)
GATCTGGCTCAAATAGCATTCCCAT
LOC_Os01g68320
Os.12967.1.A1_a_at--746--5491Chr01:40015381..40015405 (25 bp)
GAACATGTCACACGAATGGCCAAAT
LOC_Os01g68320
Os.12967.1.A1_a_at--874--771Chr01:40015333..40015357 (25 bp)
ATGTGTTCCAAGTTTAGCTTCGACT
LOC_Os01g68320
Os.12967.1.A1_a_at--1106--5691Chr01:40015280..40015304 (25 bp)
GACTATTGAGGCAACGTCCTCGTGC
LOC_Os01g68320
Os.12967.1.A1_a_at--16--9271Chr01:40015264..40015288 (25 bp)
TCCTCGTGCGGTACTGGTTATTGTT
LOC_Os01g68320
Target Sequence 
TAATGGCTGCCACAGATGTAGCGGCACGTGGTCTTGATGTCAAGGATATTAAGTGTGTGATAAATTTTGATTTTCCAACA
ACTCTTGAAGATTATATTCACAGAATAGGTCGAACTGGCCGCGCTGGTGCTAGTGGAACTGCATTCACCTTTTTCACACT
CTCCAATGCAAAATTCTCCAGGAATCTTGTTAAGATCTTGAGGGAAGCTGGCCAGGTTGTGAATCCAGCGCTAGAATCTA
TGGCTAAATCTGCCAGTTCTATGGGAGGAGGCAATTTCCGGTCAAGGGGGCGTGGTGGGTTTGGTAACAGATCTGGCTCA
AATAGCATTCCCATAAGAGGAAGAAGGCCATACTGAGGGCGGCAAAAAGATTAAAACTTTTACTGTATACCGATAGGTGG
AACATGTCACACGAATGGCCAAATATACTTATCCAACAGCGTAGGATATGTGTTCCAAGTTTAGCTTCGACTTGGAGAAT
GGTTTGTCCAGTGTTATTTTGACTATTGAGGCAACGTCCTCGTGCGGTACTGGTTATTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12967.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis