Browse Element(s) Details


Os.42786.1.A1_at

Description gb:CA760301
DB_XREF= gi:25804340
DB_XREF=BR060010B10F01.ab1
CLONE=BR060010B10F01.ab1
TID=Os.42786.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42786 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0470A12.1 (P0470A12.1), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g682609/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68210OsAffx.11786.1.S1_at11/111+39970541..39971692hypothetical protein
LOC_Os01g68220Os.35344.18.S1_x_at10/111+39974332..39980505transposon protein, putative, Mutator sub-class
LOC_Os01g68220Os.35344.3.S1_x_at9/111+39974332..39980505transposon protein, putative, Mutator sub-class
LOC_Os01g68220OsAffx.22940.5.S1_x_at3/111+39974332..39980505transposon protein, putative, Mutator sub-class
LOC_Os01g68230Os.47795.1.S1_at11/111+39981483..39984634expressed protein
LOC_Os01g68240OsAffx.2435.1.S1_at10/111+39984792..39987482hypothetical protein
LOC_Os01g68240Os.52822.1.S1_at10/111+39984792..39987482hypothetical protein
LOC_Os01g68250OsAffx.23970.1.S1_at11/111+39989866..39992459expressed protein
LOC_Os01g68260Os.42786.1.A1_at9/111+39993504..39997516expressed protein
LOC_Os01g68270Os.33773.1.S1_at11/111+39997588..39999102expressed protein
LOC_Os01g68279NANA1+40005305..40006009NA
LOC_Os01g68290Os.42784.1.S1_at8/111+40006399..40006953expressed protein
LOC_Os01g68300Os.11975.2.A1_at11/111+40009684..40010287expressed protein
LOC_Os01g68310Os.11975.1.S1_at11/111+40011433..40014161expressed protein
LOC_Os01g68320Os.12967.1.A1_a_at11/111+40015110..40020008ATP-dependent RNA helicase DBP2, putative, expressed
LOC_Os01g68320Os.12967.4.S1_x_at11/111+40015110..40020008ATP-dependent RNA helicase DBP2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42786.1.A1_at--60--7571Chr01:39996067..39996091 (25 bp)
GGGCCTCGATTTCGCTCTTAGAAGA
LOC_Os01g68260
Os.42786.1.A1_at--882--10451Chr01:39996084..39996496 (25 bp)
TTAGAAGATGTGTTGAGCCAGCTCA
LOC_Os01g68260
Os.42786.1.A1_at--124--10751Chr01:39996487..39996508 (22 bp)
TTGAGCCAGCTCACGAGAAAATCGG
LOC_Os01g68260
Os.42786.1.A1_at--200--8051Chr01:39997155..39997179 (25 bp)
GGAAAAGGGATCACACCGCCAAATT
LOC_Os01g68260
Os.42786.1.A1_at--564--5511NONE
GAAAATTCCCGCACATCAGGAGTAA
NONE
Os.42786.1.A1_at--887--7111Chr01:39997224..39997248 (25 bp)
GTCTTAGCAAGTTTTCCATTTCGGA
LOC_Os01g68260
Os.42786.1.A1_at--1024--8131Chr01:39997246..39997270 (25 bp)
GGAAATCTGCCTCTTGCGTATAGGA
LOC_Os01g68260
Os.42786.1.A1_at--879--2711Chr01:39997318..39997342 (25 bp)
AAGCAGCTGCCTTCTGCAAATTTCA
LOC_Os01g68260
Os.42786.1.A1_at--504--691Chr01:39997358..39997382 (25 bp)
ATGAGAATCGCCAGTTCTCGCCTTT
LOC_Os01g68260
Os.42786.1.A1_at--410--711NONE
ATGTTGTTAGTACACGTAGCCCGCT
NONE
Os.42786.1.A1_at--1020--111Chr01:39997460..39997484 (25 bp)
ATTCTATGCTCTGCTTCCTTGTTCA
LOC_Os01g68260
Target Sequence 
GGGCCTCGATTTCGCTCTTAGAAGATGTGTTGAGCCAGCTCACGAGAAAATCGGNNNTGTTGATTNTCAGTGGGTTATTC
NTCAGGTTATTCCGTCNCTGGGGAACCAGGGCNCGGCTGAGAATGNAAGAACNCCATGGGAAGGGGTGAGAGCTCGCTGT
AGAAAAGAATGGGGGATGTTCCAAAAAAGGTTGGCTGATGCTGAGAAGGCATATTACTTAGGAAAAGGGATCACACCGCC
AAATTGAACAGCAGTTTAGATGAAAATTCCCGCACATCAGGAGTAACAAGTCTTAGCAAGTTTTCCATTTCGGAAATCTG
CCTCTTGCGTATAGGAATAGAGATGTTCATCAAAGCATTGTCGCCAAAATAAGAAGAGAAAGAAAGCAGCTGCCTTCTGC
AAATTTCAGGGCAAGTTTTGTACATGAGAATCGCCAGTTCTCGCCTTTTTTTCACTTGGTTTTATTATTATTCTTTGGTA
GTGAGATTAGCTATGTTGTTAGTACACGTAGCCCGCTGTAACAAGGGGATTCTATGCTCTGCTTCCTTGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42786.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis