Browse Element(s) Details


Os.52822.1.S1_at

Description gb:AK069450.1
DB_XREF= gi:32979474
TID=Os.52822.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52822 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023019B17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019B17, full insert sequence.
FL= gb:AK069450.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6824010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68160Os.9025.2.S1_at11/111+39943052..39960668Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68160Os.9025.1.A1_s_at11/111+39943052..39960668Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68160OsAffx.21304.1.S1_at2/111+39943052..39960668Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68179NANA1+39961528..39962031hypothetical protein
LOC_Os01g68200OsAffx.23969.1.S1_at11/111+39965630..39968123expressed protein
LOC_Os01g68210OsAffx.11786.1.S1_at11/111+39970541..39971692hypothetical protein
LOC_Os01g68220Os.35344.18.S1_x_at10/111+39974332..39980505transposon protein, putative, Mutator sub-class
LOC_Os01g68220Os.35344.3.S1_x_at9/111+39974332..39980505transposon protein, putative, Mutator sub-class
LOC_Os01g68220OsAffx.22940.5.S1_x_at3/111+39974332..39980505transposon protein, putative, Mutator sub-class
LOC_Os01g68230Os.47795.1.S1_at11/111+39981483..39984634expressed protein
LOC_Os01g68240OsAffx.2435.1.S1_at10/111+39984792..39987482hypothetical protein
LOC_Os01g68240Os.52822.1.S1_at10/111+39984792..39987482hypothetical protein
LOC_Os01g68250OsAffx.23970.1.S1_at11/111+39989866..39992459expressed protein
LOC_Os01g68260Os.42786.1.A1_at9/111+39993504..39997516expressed protein
LOC_Os01g68270Os.33773.1.S1_at11/111+39997588..39999102expressed protein
LOC_Os01g68279NANA1+40005305..40006009NA
LOC_Os01g68290Os.42784.1.S1_at8/111+40006399..40006953expressed protein
LOC_Os01g68300Os.11975.2.A1_at11/111+40009684..40010287expressed protein
LOC_Os01g68310Os.11975.1.S1_at11/111+40011433..40014161expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52822.1.S1_at--204--6551Chr01:39985186..39985210 (25 bp)
GATTCCGGCGTCCAATAGCCAGGCG
LOC_Os01g68240
Os.52822.1.S1_at--756--9411Chr01:39985295..39985319 (25 bp)
TCGTCGCGCACGCAGGGAAATCAAC
LOC_Os01g68240
Os.52822.1.S1_at--656--8151Chr01:39985310..39985333 (24 bp)
GGAAATCAACGCCTCTCCCGGGTGA
LOC_Os01g68240
Os.52822.1.S1_at--994--4491NONE
GCCGTGATCTGGAAGCACTATATAC
NONE
Os.52822.1.S1_at--685--2531Chr01:39986559..39986583 (25 bp)
AACTACATAGTGAATCTGAGGCCAT
LOC_Os01g68240
Os.52822.1.S1_at--92--3872Chr01:39986574..39986598 (25 bp)
CTGAGGCCATTGTTTGGTGCATGCC
LOC_Os01g68240
Os.52822.1.S1_at--255--10251Chr01:39986586..39986610 (25 bp)
TTTGGTGCATGCCTTCATCGGAAGT
LOC_Os01g68240
Os.52822.1.S1_at--362--3651Chr01:39986598..39986622 (25 bp)
CTTCATCGGAAGTTCTGCCTTTTTT
LOC_Os01g68240
Os.52822.1.S1_at--307--8131Chr01:39986640..39986664 (25 bp)
TGGACTACTTATGAACGTGGAACTT
LOC_Os01g68240
Os.52822.1.S1_at--113--7532Chr01:39986656..39986680 (25 bp)
GTGGAACTTCTCTATCCTTTTGTAA
LOC_Os01g68240
Os.52822.1.S1_at--706--5711Chr01:39986760..39986784 (25 bp)
GACTGAGTTGCCTGTAAATTTGTAA
LOC_Os01g68240
Target Sequence 
GATTCCGGCGTCCAATAGCCAGGCGCGCCGGCCGCCGGTACCCGCGGCGGCGGCGGCGGCGGTGCCTCCCCTTCCTTCGC
GGCGTCTTCCTCCTTTGCGCCGGCATCCTTCGTCGCGCACGCAGGGAAATCAACGCCTCTCCCGGGTGATTGCGCCGAGA
GGGGTAGGGAGAAGGGAGGGAGATCCGGCCACCCTGCAAGGCATCGTCACCGCCGTGATCTGGAAGCACTATATACAACT
ACATAGTGAATCTGAGGCCATTGTTTGGTGCATGCCTTCATCGGAAGTTCTGCCTTTTTTTTTTAACTTGAGTTGTATGG
ACTACTTATGAACGTGGAACTTCTCTATCCTTTTGTAATAAAACACTATAATTCAGATGGTTGGAGTGTAATGCTTGTGA
TAAAGCAAAATGCTTTTACTCTTATTTGGAGTTTACAGACTGAGTTGCCTGTAAATTTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52822.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis