Browse Element(s) Details


Os.11975.2.A1_at

Description gb:CD670998
DB_XREF= gi:38568783
DB_XREF=OsMR419
TID=Os.11975.2
CNT=54
FEA=mRNA
TIER=Stack
STK=37
UG=Os.11975 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0470A12.5 (P0470A12.5), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6830011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68240OsAffx.2435.1.S1_at10/111+39984792..39987482hypothetical protein
LOC_Os01g68240Os.52822.1.S1_at10/111+39984792..39987482hypothetical protein
LOC_Os01g68250OsAffx.23970.1.S1_at11/111+39989866..39992459expressed protein
LOC_Os01g68260Os.42786.1.A1_at9/111+39993504..39997516expressed protein
LOC_Os01g68270Os.33773.1.S1_at11/111+39997588..39999102expressed protein
LOC_Os01g68279NANA1+40005305..40006009NA
LOC_Os01g68290Os.42784.1.S1_at8/111+40006399..40006953expressed protein
LOC_Os01g68300Os.11975.2.A1_at11/111+40009684..40010287expressed protein
LOC_Os01g68310Os.11975.1.S1_at11/111+40011433..40014161expressed protein
LOC_Os01g68320Os.12967.1.A1_a_at11/111+40015110..40020008ATP-dependent RNA helicase DBP2, putative, expressed
LOC_Os01g68320Os.12967.4.S1_x_at11/111+40015110..40020008ATP-dependent RNA helicase DBP2, putative, expressed
LOC_Os01g68324Os.9998.2.S1_x_at11/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68324Os.9998.1.S1_at11/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68324OsAffx.24206.1.S1_at1/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68324OsAffx.24206.2.S1_s_at1/111+40022895..40030022Ribophorin II family protein, expressed
LOC_Os01g68330Os.27858.1.S1_at11/111+40030156..40034899ABC transporter family protein, expressed
LOC_Os01g68330Os.27858.2.S1_x_at11/111+40030156..40034899ABC transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11975.2.A1_at--191--3151Chr01:40010240..40010264 (25 bp)
AATTAACCATTTCTCGCTCATCACA
LOC_Os01g68300
Os.11975.2.A1_at--555--1051Chr01:40010165..40010189 (25 bp)
AGGTGGACTACTGCTCGGAGGAGGT
LOC_Os01g68300
Os.11975.2.A1_at--929--5091Chr01:40010086..40010110 (25 bp)
GCACGTCGTCAAGGAGACGTTCCAG
LOC_Os01g68300
Os.11975.2.A1_at--614--5991Chr01:40010073..40010097 (25 bp)
GAGACGTTCCAGGAGATCGACAGGT
LOC_Os01g68300
Os.11975.2.A1_at--129--5171Chr01:40009937..40009961 (25 bp)
GCAAGCAGAGCTTCCTGCTCAAGTC
LOC_Os01g68300
Os.11975.2.A1_at--1089--9071Chr01:40009922..40009946 (25 bp)
TGCTCAAGTCCGACTGATCGAACCT
LOC_Os01g68300
Os.11975.2.A1_at--71--5731Chr01:40009911..40009935 (25 bp)
GACTGATCGAACCTGCTGTGTGTAC
LOC_Os01g68300
Os.11975.2.A1_at--791--8491Chr01:40009831..40009855 (25 bp)
TGGCTTAGCTCTACGTGTATATCGT
LOC_Os01g68300
Os.11975.2.A1_at--1117--3991Chr01:40009818..40009842 (25 bp)
CGTGTATATCGTGCGTGCGTGTGTA
LOC_Os01g68300
Os.11975.2.A1_at--615--7471Chr01:40009800..40009824 (25 bp)
GTGTGTACGTGCGTACACGGAGCTT
LOC_Os01g68300
Os.11975.2.A1_at--123--10011Chr01:40009776..40009800 (25 bp)
TAGCTAATTAGCACCTTCTTCTCTG
LOC_Os01g68300
Target Sequence 
AATTAACCATTTCTCGCTCATCACAACACCACNNCNCNNCNCNCNCNNNCTAANNAACAATGNCTCACTACCAGGAGGTG
GACTACTGCTCGGAGGAGGTGAGGTCGGTGACCCCCACCGGCGGCTTCCTCGGCCGCGGCGGCGTNNNGCAGCAGCACGT
CGTCAAGGAGACGTTCCAGGAGATCGACAGGTCCGGCTCCGGCCGCCACCNNNNNNNNNNNNNNNNNNACCACAACCACA
ACCACGGCAACGACTACCTGANGGTGCGCGAGACCAAGGTGGAGGAGGACTTCAACACCTGCACCGGCGAGTTCCGCGAG
CGCAAGCAGAGCTTCCTGCTCAAGTCCGACTGATCGAACCTGCTGTGTGTACCCGTGTACGTACGTACGTATATGTGTGC
CCGTACGTAGTCGTGGTGGTCATGTGNTGGCTTAGCTCTACGTGTATATCGTGCGTGCGTGTGTACGTGCGTACACGGAG
CTTAGCTAATTAGCACCTTCTTCTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11975.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis