Browse Element(s) Details


Os.7417.1.S1_at

Description gb:AU101016
DB_XREF= gi:9865266
DB_XREF=AU101016
CLONE=C62909
TID=Os.7417.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.7417 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_197417.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0508011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05040Os.20602.2.S1_x_at11/1111+2197132..2199306hAT family dimerisation domain containing protein
LOC_Os11g05050Os.37549.1.S1_at11/1111+2200025..2203638Stem-specific protein TSJT1, putative, expressed
LOC_Os11g05050Os.9392.1.S1_at11/1111+2200025..2203638Stem-specific protein TSJT1, putative, expressed
LOC_Os11g05060OsAffx.30823.1.S1_at10/1111+2208349..2210278hypothetical protein
LOC_Os11g05070OsAffx.7001.1.S1_at11/1111+2213504..2216573Sodium/calcium exchanger protein, expressed
LOC_Os11g05070Os.55533.1.S1_at10/1111+2213504..2216573Sodium/calcium exchanger protein, expressed
LOC_Os11g05080Os.7417.1.S1_at11/1111+2220606..2224910expressed protein
LOC_Os11g05080OsAffx.18678.1.S1_at11/1111+2220606..2224910expressed protein
LOC_Os11g05090Os.17539.1.S1_at11/1111+2225718..2229800peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os11g05090Os.10515.1.S1_at11/1111+2225718..2229800peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os11g05090Os.10515.1.S1_s_at11/1111+2225718..2229800peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os11g05100Os.47960.1.S1_at11/1111+2230515..2234853expressed protein
LOC_Os11g05100Os.56152.1.S1_x_at1/1111+2230515..2234853expressed protein
LOC_Os11g05110Os.11606.1.S1_at11/1111+2235149..2239306pyruvate kinase family protein, expressed
LOC_Os11g05110OsAffx.20650.1.S1_at1/1111+2235149..2239306pyruvate kinase family protein, expressed
LOC_Os11g05120Os.49493.1.S1_at11/1111+2240903..2243075expressed protein
LOC_Os11g05130Os.52376.1.S1_at11/1111+2243564..2251633PHD-finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7417.1.S1_at--1105--771Chr11:2224412..2224436 (25 bp)
ATGTGCATTATTTCAGCTGCTGCCT
LOC_Os11g05080
Os.7417.1.S1_at--90--1611Chr11:2224426..2224450 (25 bp)
AGCTGCTGCCTCTGGATAGAACGCA
LOC_Os11g05080
Os.7417.1.S1_at--244--10011Chr11:2224451..2224475 (25 bp)
TAGTTGGCCAGTTGGGATCGTTTCT
LOC_Os11g05080
Os.7417.1.S1_at--260--8811Chr11:2224475..2224499 (25 bp)
TGCCCGATCTTACACGTTTGTCTGA
LOC_Os11g05080
Os.7417.1.S1_at--490--2971Chr11:2224505..2224529 (25 bp)
AATGGAGCCAGCACGTTTGTCTGTC
LOC_Os11g05080
Os.7417.1.S1_at--158--8711Chr11:2224571..2224595 (25 bp)
TGTCCCGGTTGACGCAATTCTGTAA
LOC_Os11g05080
Os.7417.1.S1_at--580--1971Chr11:2224599..2224623 (25 bp)
ACTGCAGCCGACTACCAAGTTTAGT
LOC_Os11g05080
Os.7417.1.S1_at--555--6791Chr11:2224630..2224654 (25 bp)
GTTATGGATTTTGGTCTGCACTGTA
LOC_Os11g05080
Os.7417.1.S1_at--130--7591Chr11:2224659..2224683 (25 bp)
GGGCACTACTGGTTACTTCAGCTAA
LOC_Os11g05080
Os.7417.1.S1_at--819--9791Chr11:2224741..2224765 (25 bp)
TACTACTGGTTCTGGTCTGTTTTTA
LOC_Os11g05080
Os.7417.1.S1_at--526--3111Chr11:2224808..2224832 (25 bp)
AATATATATTCCCTCCACCTAAATT
LOC_Os11g05080
Target Sequence 
ATGTGCATTATTTCAGCTGCTGCCTCTGGATAGAACGCATAGTTGGCCAGTTGGGATCGTTTCTGCCCGATCTTACACGT
TTGTCTGATGATGAATGGAGCCAGCACGTTTGTCTGTCACGGCACGCTGCCGTAGTGCTGCCCCATCTTGCCGGCATCCT
GTCCCGGTTGACGCAATTCTGTAATTCACTGCAGCCGACTACCAAGTTTAGTTGTAGAGTTATGGATTTTGGTCTGCACT
GTAAGATGGGCACTACTGGTTACTTCAGCTAACAAGTACTACTTGTGTATAGGCTGGGTTTAATATAAATCTATTATCTA
AAAAACAAGTACTACTGGTTCTGGTCTGTTTTTATACTTGTTACTTCAGCTAACAAGAGATGTCTAGTTGTAGTGAAATA
TATATTCCCTCCACCTAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7417.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis