Browse Element(s) Details


Os.17539.1.S1_at

Description gb:CB683577
DB_XREF= gi:29687302
DB_XREF=OSJNEf12C06.r
CLONE=OSJNEf12C06
TID=Os.17539.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.17539 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_188801.1 (A.thaliana) FKBP-type peptidyl-prolyl cis-trans isomerases, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0509011/11peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05050Os.37549.1.S1_at11/1111+2200025..2203638Stem-specific protein TSJT1, putative, expressed
LOC_Os11g05050Os.9392.1.S1_at11/1111+2200025..2203638Stem-specific protein TSJT1, putative, expressed
LOC_Os11g05060OsAffx.30823.1.S1_at10/1111+2208349..2210278hypothetical protein
LOC_Os11g05070OsAffx.7001.1.S1_at11/1111+2213504..2216573Sodium/calcium exchanger protein, expressed
LOC_Os11g05070Os.55533.1.S1_at10/1111+2213504..2216573Sodium/calcium exchanger protein, expressed
LOC_Os11g05080Os.7417.1.S1_at11/1111+2220606..2224910expressed protein
LOC_Os11g05080OsAffx.18678.1.S1_at11/1111+2220606..2224910expressed protein
LOC_Os11g05090Os.17539.1.S1_at11/1111+2225718..2229800peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os11g05090Os.10515.1.S1_at11/1111+2225718..2229800peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os11g05090Os.10515.1.S1_s_at11/1111+2225718..2229800peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os11g05100Os.47960.1.S1_at11/1111+2230515..2234853expressed protein
LOC_Os11g05100Os.56152.1.S1_x_at1/1111+2230515..2234853expressed protein
LOC_Os11g05110Os.11606.1.S1_at11/1111+2235149..2239306pyruvate kinase family protein, expressed
LOC_Os11g05110OsAffx.20650.1.S1_at1/1111+2235149..2239306pyruvate kinase family protein, expressed
LOC_Os11g05120Os.49493.1.S1_at11/1111+2240903..2243075expressed protein
LOC_Os11g05130Os.52376.1.S1_at11/1111+2243564..2251633PHD-finger family protein, expressed
LOC_Os11g05140OsAffx.18679.1.S1_at11/1111+2253062..2257005expressed protein
LOC_Os11g05140Os.10529.1.S1_s_at11/1111+2253062..2257005expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009790biological_processembryonic development
GO:0009826biological_processunidimensional cell growth
GO:0030154biological_processcell differentiation
GO:0048364biological_processroot development
GO:0048366biological_processleaf development
GO:0005634cellular_componentnucleus
GO:0005886cellular_componentplasma membrane
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005516molecular_functioncalmodulin binding
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17539.1.S1_at--814--8911Chr11:2229324..2229348 (25 bp)
TGAGCTTCGGTCTCTCGCGGAACAG
LOC_Os11g05090
Os.17539.1.S1_at--259--5311Chr11:2229372..2229396 (25 bp)
GAAGGAGCTGTACAAAGGCCTCTTT
LOC_Os11g05090
Os.17539.1.S1_at--972--2231Chr11:2229429..2229453 (25 bp)
AAATTCCATCGTTCGCTTCTGGCAG
LOC_Os11g05090
Os.17539.1.S1_at--14--4811Chr11:2229456..2229480 (25 bp)
GCTCGTGTCCTTGATTGGTTATCTC
LOC_Os11g05090
Os.17539.1.S1_at--328--3411Chr11:2229527..2229551 (25 bp)
CAGAACTGACGATTTGACGACCAAA
LOC_Os11g05090
Os.17539.1.S1_at--866--3491Chr11:2229553..2229577 (25 bp)
CATGGACTCATTGTACTGTAGGCTG
LOC_Os11g05090
Os.17539.1.S1_at--637--7411Chr11:2229603..2229627 (25 bp)
GTGTTGAACTGCACGCAATCGGTGT
LOC_Os11g05090
Os.17539.1.S1_at--845--7091Chr11:2229626..2229650 (25 bp)
GTCAAATTCTACAATCTCTCGGCAT
LOC_Os11g05090
Os.17539.1.S1_at--620--4951Chr11:2229647..2229671 (25 bp)
GCATTTTTGTGCCTTCAGTCCTTCA
LOC_Os11g05090
Os.17539.1.S1_at--44--9651Chr11:2229661..2229685 (25 bp)
TCAGTCCTTCACTGCATTGTGACTT
LOC_Os11g05090
Os.17539.1.S1_at--60--4951Chr11:2229674..2229698 (25 bp)
GCATTGTGACTTGAGCTTTGGGAGC
LOC_Os11g05090
Target Sequence 
TGAGCTTCGGTCTCTCGCGGAACAGGATAAAGCTCTGTACCAAAAACAGAAGGAGCTGTACAAAGGCCTCTTTGGTCCAA
GGCCCGAACCCAANCCGAAGGCGTCAAATTCCATCGTTCGCTTCTGGCAGTGGCTCGTGTCCTTGATTGGTTATCTCATA
AAACTGTTCAAACCCAAGAATGAATGAATAGGAACGGATAGTGCAGAACTGACGATTTGACGACCAAAACATGGACTCAT
TGTACTGTAGGCTGGGAATTCTACTACAAGTAGTTGGGAGTGTTGAACTGCACGCAATCGGTGTCAAATTCTACAATCTC
TCGGCATTTTTGTGCCTTCAGTCCTTCACTGCATTGTGACTTGAGCTTTGGGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17539.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis