Browse Element(s) Details


Os.47960.1.S1_at

Description gb:AK066122.1
DB_XREF= gi:32976140
TID=Os.47960.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47960 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013058D19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013058D19, full insert sequence.
FL= gb:AK066122.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0510011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05060OsAffx.30823.1.S1_at10/1111+2208349..2210278hypothetical protein
LOC_Os11g05070OsAffx.7001.1.S1_at11/1111+2213504..2216573Sodium/calcium exchanger protein, expressed
LOC_Os11g05070Os.55533.1.S1_at10/1111+2213504..2216573Sodium/calcium exchanger protein, expressed
LOC_Os11g05080Os.7417.1.S1_at11/1111+2220606..2224910expressed protein
LOC_Os11g05080OsAffx.18678.1.S1_at11/1111+2220606..2224910expressed protein
LOC_Os11g05090Os.17539.1.S1_at11/1111+2225718..2229800peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os11g05090Os.10515.1.S1_at11/1111+2225718..2229800peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os11g05090Os.10515.1.S1_s_at11/1111+2225718..2229800peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os11g05100Os.47960.1.S1_at11/1111+2230515..2234853expressed protein
LOC_Os11g05100Os.56152.1.S1_x_at1/1111+2230515..2234853expressed protein
LOC_Os11g05110Os.11606.1.S1_at11/1111+2235149..2239306pyruvate kinase family protein, expressed
LOC_Os11g05110OsAffx.20650.1.S1_at1/1111+2235149..2239306pyruvate kinase family protein, expressed
LOC_Os11g05120Os.49493.1.S1_at11/1111+2240903..2243075expressed protein
LOC_Os11g05130Os.52376.1.S1_at11/1111+2243564..2251633PHD-finger family protein, expressed
LOC_Os11g05140OsAffx.18679.1.S1_at11/1111+2253062..2257005expressed protein
LOC_Os11g05140Os.10529.1.S1_s_at11/1111+2253062..2257005expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47960.1.S1_at--1162--5391Chr11:2234362..2234386 (25 bp)
GAAGCTAAAGATTCTCCTGCACAAC
LOC_Os11g05100
Os.47960.1.S1_at--241--3591Chr11:2234450..2234474 (25 bp)
CATTTTTTACGTAGTGCTTGGCAAC
LOC_Os11g05100
Os.47960.1.S1_at--1027--6691Chr11:2234499..2234523 (25 bp)
GTTCCTTTAGCTACACATTCTGTTT
LOC_Os11g05100
Os.47960.1.S1_at--248--5591Chr11:2234565..2234589 (25 bp)
GAAATCCAATGGGTGCATGCAATGC
LOC_Os11g05100
Os.47960.1.S1_at--1137--9631Chr11:2234681..2234705 (25 bp)
TCAGCTGTTTGTTGTGACCTTTTCA
LOC_Os11g05100
Os.47960.1.S1_at--346--7331Chr11:2234694..2234718 (25 bp)
GTGACCTTTTCAGCAACGTCAGGTT
LOC_Os11g05100
Os.47960.1.S1_at--519--6751Chr11:2234720..2234744 (25 bp)
GTTCAGACATCATAGCCCATTTCAG
LOC_Os11g05100
Os.47960.1.S1_at--706--8671Chr11:2234772..2234796 (25 bp)
TGTGTATGATTCTAGCTGACCCCAG
LOC_Os11g05100
Os.47960.1.S1_at--37--4751Chr11:2234786..2234810 (25 bp)
GCTGACCCCAGTTGCTTTGTAATAA
LOC_Os11g05100
Os.47960.1.S1_at--26--10071Chr11:2234813..2234837 (25 bp)
TAGTAAACCTGGAAGTCGCCGACCA
LOC_Os11g05100
Os.47960.1.S1_at--356--9331Chr11:2234828..2234852 (25 bp)
TCGCCGACCACAACAGGTTATCTGT
LOC_Os11g05100
Target Sequence 
GAAGCTAAAGATTCTCCTGCACAACTGCTTCTNGAAGGTTAACAGTATTGGTCAATGATCATTCTTTTGTGCAAGTAGCA
TTTTGCACCATTTTTTACGTAGTGCTTGGCAACAGCACTAGTATGGGAAGCCAAAATGTTCCTTTAGCTACACATTCTGT
TTAGACTGGACTGAAGTACAGCACATTGAAGTGTACAAACTGCGAAATCCAATGGGTGCATGCAATGCANTAATAGACGT
GTATAGATTGTAAGCTTAAATAATCGGTATAGAGGAGGGAGAGATGAGGCTGTATTGAGCTGATTACAAGCTATATAAAT
CAGCTGTTTGTTGTGACCTTTTCAGCAACGTCAGGTTTGTTCAGACATCATAGCCCATTTCAGCAAATGAGATCTGCAAA
TGATGTGGAATGTGTATGATTCTAGCTGACCCCAGTTGCTTTGTAATAAGTTAGTAAACCTGGAAGTCGCCGACCACAAC
AGGTTATCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47960.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis