Browse Element(s) Details


Os.49493.1.S1_at

Description gb:AK100066.1
DB_XREF= gi:32985275
TID=Os.49493.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49493 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033093M12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013161L12, full insert sequence.
FL= gb:AK102442.1 gb:AK100066.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0512011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05070OsAffx.7001.1.S1_at11/1111+2213504..2216573Sodium/calcium exchanger protein, expressed
LOC_Os11g05070Os.55533.1.S1_at10/1111+2213504..2216573Sodium/calcium exchanger protein, expressed
LOC_Os11g05080Os.7417.1.S1_at11/1111+2220606..2224910expressed protein
LOC_Os11g05080OsAffx.18678.1.S1_at11/1111+2220606..2224910expressed protein
LOC_Os11g05090Os.17539.1.S1_at11/1111+2225718..2229800peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os11g05090Os.10515.1.S1_at11/1111+2225718..2229800peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os11g05090Os.10515.1.S1_s_at11/1111+2225718..2229800peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os11g05100Os.47960.1.S1_at11/1111+2230515..2234853expressed protein
LOC_Os11g05100Os.56152.1.S1_x_at1/1111+2230515..2234853expressed protein
LOC_Os11g05110Os.11606.1.S1_at11/1111+2235149..2239306pyruvate kinase family protein, expressed
LOC_Os11g05110OsAffx.20650.1.S1_at1/1111+2235149..2239306pyruvate kinase family protein, expressed
LOC_Os11g05120Os.49493.1.S1_at11/1111+2240903..2243075expressed protein
LOC_Os11g05130Os.52376.1.S1_at11/1111+2243564..2251633PHD-finger family protein, expressed
LOC_Os11g05140OsAffx.18679.1.S1_at11/1111+2253062..2257005expressed protein
LOC_Os11g05140Os.10529.1.S1_s_at11/1111+2253062..2257005expressed protein
LOC_Os11g05150NANA11+2260356..2261258hydroxyproline-rich glycoprotein family protein, putative
LOC_Os11g05160Os.47918.1.S1_at11/1111+2266868..2269937expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49493.1.S1_at--1054--4431Chr11:2242614..2242638 (25 bp)
GCCTTCGAGAAGGACTTCCGCCAAG
LOC_Os11g05120
Os.49493.1.S1_at--1078--10631Chr11:2242364..2242623 (25 bp)
TTCCGCCAAGCCCTTATGAAAGAAA
LOC_Os11g05120
Os.49493.1.S1_at--502--1471Chr11:2242288..2242312 (25 bp)
AGAAGGCGGATCACAGGGAGCTCTT
LOC_Os11g05120
Os.49493.1.S1_at--156--1591Chr11:2242253..2242277 (25 bp)
AGCTCTATGTGGGTTGCTGAGGATA
LOC_Os11g05120
Os.49493.1.S1_at--980--8151Chr11:2242224..2242248 (25 bp)
GGAAACAACAATTCTTGACGCTATC
LOC_Os11g05120
Os.49493.1.S1_at--814--2251Chr11:2242201..2242221 (21 bp)
AAATACCACAGCTCTCTGAGGATAC
LOC_Os11g05120
Os.49493.1.S1_at--1063--1551Chr11:2241185..2241209 (25 bp)
AGCTTATTTGTGATTCCCTTCTGGA
LOC_Os11g05120
Os.49493.1.S1_at--999--10671Chr11:2241053..2241077 (25 bp)
TTGCCTTTTTTCTGAGAGAGACCTC
LOC_Os11g05120
Os.49493.1.S1_at--830--1752Chr08:17680624..17680853 (25 bp)
ACCTCTCTCCTCAAATTTCTGTTAA
NONE
Os.49493.1.S1_at--867--8431Chr11:2240980..2241004 (25 bp)
GGCCAAATTTTGATTTTCCTGCATG
LOC_Os11g05120
Os.49493.1.S1_at--180--9871Chr11:2240934..2240958 (25 bp)
TACGTTTGGGTACATTTGTCTACAT
LOC_Os11g05120
Target Sequence 
GCCTTCGAGAAGGACTTCCGCCAAGCCCTTATGAAAGAAAGAGCTGAGAAGCTGGAGAGCTGGAGGGAGAAGGAGAAGCT
TAAAGTACAGAAGAAGGCGGATCACAGGGAGCTCTTGCGCAAGNAAAGCTCTATGTGGGTTGCTGAGGATAAACTGGAAA
CAACAATTCTTGACGCTATCAAAAATACCACAGCTCTCTGAGGATACAAGATGGTGTATTCTGAAAGCATGACGGAGGAT
GGACTGAAGGAAGCTTATTTGTGATTCCCTTCTGGAACTAATCACAACTGCCTAAGCAATAACAACCATATTTGAAAATT
CTGCTGCAACACTGTATGTTATATTGTTAGACTTGAACGCCAAGCTGAAATTGTATTTTGGCATTGCCTTTTTTCTGAGA
GAGACCTCTCTCCTCAAATTTCTGTTAAAAATTTGTTGCACGATTAAAATTATCATGGCCAAATTTTGATTTTCCTGCAT
GATCTAGTTGCAAACTGTGTTTTACGTTTGGGTACATTTGTCTACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49493.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis