Browse Element(s) Details


Os.55533.1.S1_at

Description gb:AK108267.1
DB_XREF= gi:32993476
TID=Os.55533.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55533 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-141-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-B11, full insert sequence.
FL= gb:AK108267.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0507010/11Sodium/calcium exchanger protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05040Os.20602.2.S1_x_at11/1111+2197132..2199306hAT family dimerisation domain containing protein
LOC_Os11g05050Os.37549.1.S1_at11/1111+2200025..2203638Stem-specific protein TSJT1, putative, expressed
LOC_Os11g05050Os.9392.1.S1_at11/1111+2200025..2203638Stem-specific protein TSJT1, putative, expressed
LOC_Os11g05060OsAffx.30823.1.S1_at10/1111+2208349..2210278hypothetical protein
LOC_Os11g05070OsAffx.7001.1.S1_at11/1111+2213504..2216573Sodium/calcium exchanger protein, expressed
LOC_Os11g05070Os.55533.1.S1_at10/1111+2213504..2216573Sodium/calcium exchanger protein, expressed
LOC_Os11g05080Os.7417.1.S1_at11/1111+2220606..2224910expressed protein
LOC_Os11g05080OsAffx.18678.1.S1_at11/1111+2220606..2224910expressed protein
LOC_Os11g05090Os.17539.1.S1_at11/1111+2225718..2229800peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os11g05090Os.10515.1.S1_at11/1111+2225718..2229800peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os11g05090Os.10515.1.S1_s_at11/1111+2225718..2229800peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os11g05100Os.47960.1.S1_at11/1111+2230515..2234853expressed protein
LOC_Os11g05100Os.56152.1.S1_x_at1/1111+2230515..2234853expressed protein
LOC_Os11g05110Os.11606.1.S1_at11/1111+2235149..2239306pyruvate kinase family protein, expressed
LOC_Os11g05110OsAffx.20650.1.S1_at1/1111+2235149..2239306pyruvate kinase family protein, expressed
LOC_Os11g05120Os.49493.1.S1_at11/1111+2240903..2243075expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0005432molecular_functioncalcium:sodium antiporter activity
GO:0015491molecular_functioncation:cation antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55533.1.S1_at--1141--1871NONE
ACGATGTTCAGTAAGTTGCTGCAGA
NONE
Os.55533.1.S1_at--284--1871Chr11:2213676..2213700 (25 bp)
ACGAGGTGCAAGATGCCTCCAGGCT
LOC_Os11g05070
Os.55533.1.S1_at--997--3811Chr11:2213660..2213684 (25 bp)
CTCCAGGCTGCAATACAACTTCTTA
LOC_Os11g05070
Os.55533.1.S1_at--6--10851Chr11:2213633..2213657 (25 bp)
TTGGCAGCTGATGCATACAGCCCTT
LOC_Os11g05070
Os.55533.1.S1_at--966--331Chr11:2213619..2213643 (25 bp)
ATACAGCCCTTCACACTGAATTGGC
LOC_Os11g05070
Os.55533.1.S1_at--139--5211Chr11:2213602..2213626 (25 bp)
GAATTGGCTTGTACTGGTCTGGCAT
LOC_Os11g05070
Os.55533.1.S1_at--362--7811Chr11:2213587..2213611 (25 bp)
GGTCTGGCATGTTCCTGTGGATTCT
LOC_Os11g05070
Os.55533.1.S1_at--1090--8651Chr11:2213572..2213596 (25 bp)
TGTGGATTCTTCTGTACCTTCATTT
LOC_Os11g05070
Os.55533.1.S1_at--299--8751Chr11:2213560..2213584 (25 bp)
TGTACCTTCATTTTACGAGTTCATG
LOC_Os11g05070
Os.55533.1.S1_at--821--1871Chr11:2213546..2213570 (25 bp)
ACGAGTTCATGAGTTCAGGCCAGAG
LOC_Os11g05070
Os.55533.1.S1_at--714--6411Chr11:2213517..2213541 (25 bp)
GATCTTGCTGGCGATGTGCATCAGT
LOC_Os11g05070
Target Sequence 
ACGATGTTCAGTAAGTTGCTGCAGAGCAATGGTTCATTTCGATGGGGATGGTTCACGAGGTGCAAGATGCCTCCAGGCTG
CAATACAACTTCTTATCTTGGCAGCTGATGCATACAGCCCTTCACACTGAATTGGCTTGTACTGGTCTGGCATGTTCCTG
TGGATTCTTCTGTACCTTCATTTTACGAGTTCATGAGTTCAGGCCAGAGGGGAGATCTTGCTGGCGATGTGCATCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55533.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis