Browse Element(s) Details


OsAffx.30821.1.S1_at

Description tigr:9639.m00411
TID=OsAffx.30821.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0497011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04930Os.50597.1.S1_at11/1111+2099707..2102938SPRY domain containing protein, expressed
LOC_Os11g04940OsAffx.6998.1.S1_at11/1111+2106545..2107762Lipase family protein
LOC_Os11g04950Os.18447.1.S2_at11/1111+2108141..2114673expressed protein
LOC_Os11g04950Os.18447.1.S1_at10/1111+2108141..2114673expressed protein
LOC_Os11g04960OsAffx.6999.1.S1_at11/1111+2120656..2122507No apical meristem protein, expressed
LOC_Os11g04970OsAffx.30821.1.S1_at11/1111+2124964..2125458hypothetical protein
LOC_Os11g04980Os.17798.1.S1_at11/1111+2127778..2137256AMP-binding enzyme family protein, expressed
LOC_Os11g04990Os.53519.1.S1_at11/1111+2141080..2143972expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30821.1.S1_at--219--7211Chr11:2125401..2125425 (25 bp)
GTCGAGAAGGGCTATGTTCTTTCCC
LOC_Os11g04970
OsAffx.30821.1.S1_at--742--5311Chr11:2125396..2125420 (25 bp)
GAAGGGCTATGTTCTTTCCCTCGTT
LOC_Os11g04970
OsAffx.30821.1.S1_at--626--10032Chr07:25538211..25538254 (24 bp)
TATGTTCTTTCCCTCGTTTTCCGCA
NONE
OsAffx.30821.1.S1_at--654--10652Chr01:37334514..37334534 (21 bp)
TTCCCTCGTTTTCCGCATGCACGAT
NONE
OsAffx.30821.1.S1_at--382--7391Chr11:2125058..2125082 (25 bp)
GTGAGGCTATAAACCCATACCGACT
LOC_Os11g04970
OsAffx.30821.1.S1_at--978--9811Chr11:2125049..2125073 (25 bp)
TAAACCCATACCGACTAGCTTATCA
LOC_Os11g04970
OsAffx.30821.1.S1_at--914--5691Chr11:2125037..2125061 (25 bp)
GACTAGCTTATCACCTCGGTGAGCT
LOC_Os11g04970
OsAffx.30821.1.S1_at--491--7751Chr11:2125020..2125044 (25 bp)
GGTGAGCTAGCCAAAATACCCTTAG
LOC_Os11g04970
OsAffx.30821.1.S1_at--63--311Chr11:2125005..2125029 (25 bp)
ATACCCTTAGACGTTTCTCGTGGTG
LOC_Os11g04970
OsAffx.30821.1.S1_at--623--4291Chr11:2125001..2125025 (25 bp)
CCTTAGACGTTTCTCGTGGTGGTGA
LOC_Os11g04970
OsAffx.30821.1.S1_at--886--1391Chr11:2124997..2125021 (25 bp)
AGACGTTTCTCGTGGTGGTGATGAT
LOC_Os11g04970
Target Sequence 
GTCGAGAAGGGCTATGTTCTTTCCCTCGTTTTCCGCATGCACGATTTTCAAACTGCTAGACGAAGGGGTGAGGCTATAAA
CCCATACCGACTAGCTTATCACCTCGGTGAGCTAGCCAAAATACCCTTAGACGTTTCTCGTGGTGGTGATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30821.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis