Browse Element(s) Details


OsAffx.6998.1.S1_at

Description tigr:9639.m00409
TID=OsAffx.6998.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AC002388 putative triacylglycerol lipase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0494011/11Lipase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04900Os.51363.1.S1_at11/1111+2082440..2085141phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g04900OsAffx.6997.1.S1_x_at11/1111+2082440..2085141phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g04900Os.24619.2.S1_at11/1111+2082440..2085141phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g04900Os.24619.2.S1_x_at10/1111+2082440..2085141phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g04910Os.53331.2.S1_x_at9/1111+2086715..2089123expressed protein
LOC_Os11g04920Os.51435.1.S1_at10/1111+2093544..2096748expressed protein
LOC_Os11g04920OsAffx.30820.1.S1_at2/1111+2093544..2096748expressed protein
LOC_Os11g04920OsAffx.27670.1.S1_at1/1111+2093544..2096748expressed protein
LOC_Os11g04930Os.50597.1.S1_at11/1111+2099707..2102938SPRY domain containing protein, expressed
LOC_Os11g04940OsAffx.6998.1.S1_at11/1111+2106545..2107762Lipase family protein
LOC_Os11g04950Os.18447.1.S2_at11/1111+2108141..2114673expressed protein
LOC_Os11g04950Os.18447.1.S1_at10/1111+2108141..2114673expressed protein
LOC_Os11g04960OsAffx.6999.1.S1_at11/1111+2120656..2122507No apical meristem protein, expressed
LOC_Os11g04970OsAffx.30821.1.S1_at11/1111+2124964..2125458hypothetical protein
LOC_Os11g04980Os.17798.1.S1_at11/1111+2127778..2137256AMP-binding enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009901biological_processanther dehiscence
GO:0010152biological_processpollen maturation
GO:0005737cellular_componentcytoplasm
GO:0009507cellular_componentchloroplast
GO:0004806molecular_functiontriacylglycerol lipase activity
GO:0008970molecular_functionphospholipase A1 activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6998.1.S1_at--397--4111Chr11:2107198..2107222 (25 bp)
CGAAGCGCACGGCAGCCTGCAGCAA
LOC_Os11g04940
OsAffx.6998.1.S1_at--1072--4271Chr11:2107213..2107237 (25 bp)
CCTGCAGCAACAAGTGCGCGGCGAG
LOC_Os11g04940
OsAffx.6998.1.S1_at--1131--1031Chr11:2107236..2107260 (25 bp)
AGGTGCAGCGGATCGTCAGCGAGTA
LOC_Os11g04940
OsAffx.6998.1.S1_at--967--591Chr11:2107274..2107298 (25 bp)
ATGCCGCCGTTGAGCATCACGGTCA
LOC_Os11g04940
OsAffx.6998.1.S1_at--364--10771Chr11:2107283..2107307 (25 bp)
TTGAGCATCACGGTCACCGGACACA
LOC_Os11g04940
OsAffx.6998.1.S1_at--47--9291Chr11:2107494..2107518 (25 bp)
TCCGCGTGGTGAACTCGAACGACGT
LOC_Os11g04940
OsAffx.6998.1.S1_at--850--7351Chr11:2107502..2107526 (25 bp)
GTGAACTCGAACGACGTCGTGACCA
LOC_Os11g04940
OsAffx.6998.1.S1_at--202--1171Chr11:2107644..2107668 (25 bp)
AGTACAGCGACGTCGGCCGCGAGCT
LOC_Os11g04940
OsAffx.6998.1.S1_at--15--1611Chr11:2107665..2107689 (25 bp)
AGCTGCGCCTTTGCAGCCAGGGCGA
LOC_Os11g04940
OsAffx.6998.1.S1_at--974--5151Chr11:2107698..2107722 (25 bp)
GCAACGTGGTTGCATCGCATGACCT
LOC_Os11g04940
OsAffx.6998.1.S1_at--984--9051Chr11:2107708..2107732 (25 bp)
TGCATCGCATGACCTTGATTTGTAT
LOC_Os11g04940
Target Sequence 
CGAAGCGCACGGCAGCCTGCAGCAACAAGTGCGCGGCGAGGTGCAGCGGATCGTCAGCGAGTACGGCGGCGAGGGCATGC
CGCCGTTGAGCATCACGGTCACCGGACACAGCCTCGGCGCCGCGCTCGCGGTGCTCACCGCCTACGACATCACGACAAAC
TCCCCCATGCAACGCCACGGCGGCGGCGACGACGACGACGGCGAGGCGCCGATGGTGACCGCCGTGTCGTTCGGCGGGCC
GCGCGTGGGCAACGCGGCGTTCCGGCGAAGGCTGGAGGAGAGCGGCGGCAAGGTGCTCCGCGTGGTGAACTCGAACGACG
TCGTGACCAAGGTGCCGGGGTTCCCCGTCGACGGCGACGACTGCGGCGGCGGCGCTCGGGAGGGCGACGCGCCGGCGAGG
AGGAAACCGAGGTTGCCGAGGTGGCTGGTGTCCAAGATGGGGTGGGAGTACAGCGACGTCGGCCGCGAGCTGCGCCTTTG
CAGCCAGGGCGACACGGCGCGCAACGTGGTTGCATCGCATGACCTTGATTTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6998.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis