Browse Element(s) Details


Os.51435.1.S1_at

Description gb:AK062801.1
DB_XREF= gi:32972819
TID=Os.51435.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51435 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-D01, full insert sequence.
FL= gb:AK062801.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0492010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04870NANA11+2068920..2069681hypothetical protein
LOC_Os11g04880Os.38470.1.S1_at11/1111+2070436..2073045Ubiquitin-like protein 5, putative, expressed
LOC_Os11g04880Os.38470.1.S1_x_at11/1111+2070436..2073045Ubiquitin-like protein 5, putative, expressed
LOC_Os11g04890OsAffx.18676.1.S1_at11/1111+2073422..2075729expressed protein
LOC_Os11g04900Os.51363.1.S1_at11/1111+2082440..2085141phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g04900OsAffx.6997.1.S1_x_at11/1111+2082440..2085141phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g04900Os.24619.2.S1_at11/1111+2082440..2085141phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g04900Os.24619.2.S1_x_at10/1111+2082440..2085141phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g04910Os.53331.2.S1_x_at9/1111+2086715..2089123expressed protein
LOC_Os11g04920Os.51435.1.S1_at10/1111+2093544..2096748expressed protein
LOC_Os11g04920OsAffx.30820.1.S1_at2/1111+2093544..2096748expressed protein
LOC_Os11g04920OsAffx.27670.1.S1_at1/1111+2093544..2096748expressed protein
LOC_Os11g04930Os.50597.1.S1_at11/1111+2099707..2102938SPRY domain containing protein, expressed
LOC_Os11g04940OsAffx.6998.1.S1_at11/1111+2106545..2107762Lipase family protein
LOC_Os11g04950Os.18447.1.S2_at11/1111+2108141..2114673expressed protein
LOC_Os11g04950Os.18447.1.S1_at10/1111+2108141..2114673expressed protein
LOC_Os11g04960OsAffx.6999.1.S1_at11/1111+2120656..2122507No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51435.1.S1_at--28--1751Chr11:2095012..2095279 (25 bp)
ACCTTGGCAATTTGTCTCTTCTGGA
LOC_Os11g04920
Os.51435.1.S1_at--897--211NONE
ATTTGTCTCTTCTGGAGTCATGGAA
NONE
Os.51435.1.S1_at--746--3431Chr11:2096502..2096524 (23 bp)
CAGTCGGTCTGACACCGGATGACAT
LOC_Os11g04920
Os.51435.1.S1_at--1159--4251Chr11:2096514..2096538 (25 bp)
CCGGATGACATCTGAGGTGGCTAAT
LOC_Os11g04920
Os.51435.1.S1_at--654--291Chr11:2096551..2096575 (25 bp)
ATAGAAACTCAATCTGCTGCAGTGG
LOC_Os11g04920
Os.51435.1.S1_at--824--3031Chr11:2096561..2096585 (25 bp)
AATCTGCTGCAGTGGTCCTTTGGTG
LOC_Os11g04920
Os.51435.1.S1_at--230--7251Chr11:2096575..2096599 (25 bp)
GTCCTTTGGTGTCCCAACATTGTTA
LOC_Os11g04920
Os.51435.1.S1_at--428--2591Chr11:2096612..2096636 (25 bp)
AACGTTCATCGTTGTTCCTTGATGT
LOC_Os11g04920
Os.51435.1.S1_at--730--6691Chr11:2096625..2096649 (25 bp)
GTTCCTTGATGTCGACTTCTGTCTA
LOC_Os11g04920
Os.51435.1.S1_at--143--7231Chr11:2096635..2096659 (25 bp)
GTCGACTTCTGTCTAGTGTCTTGAA
LOC_Os11g04920
Os.51435.1.S1_at--645--10871Chr11:2096660..2096684 (25 bp)
TTGGCAAGCCTGAATAATCACTGTT
LOC_Os11g04920
Target Sequence 
ACCTTGGCAATTTGTCTCTTCTGGAGTCATGGAAGGTGATGAGGACAAGAAAACTGTTAAAACAGGTGCTATGTCATGAA
ATGAAGCATGCTCGTAATGAAGGAGGACAAGTATTTGAAGGTGAGCTGGAACACAAGAAGGCAAGAATGGCAGAAAGCTC
ACAGAACAAAGGAGAAGATGAAGAGACCCTTCTGCCAGTCGGTCTGACACCGGATGACATCTGAGGTGGCTAATCAATGT
GATTCAATAGAAACTCAATCTGCTGCAGTGGTCCTTTGGTGTCCCAACATTGTTAAAAACTGTGAACAACGTTCATCGTT
GTTCCTTGATGTCGACTTCTGTCTAGTGTCTTGAATTGGCAAGCCTGAATAATCACTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51435.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis