Browse Element(s) Details


OsAffx.30820.1.S1_at

Description tigr:9639.m00407
TID=OsAffx.30820.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g049202/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04870NANA11+2068920..2069681hypothetical protein
LOC_Os11g04880Os.38470.1.S1_at11/1111+2070436..2073045Ubiquitin-like protein 5, putative, expressed
LOC_Os11g04880Os.38470.1.S1_x_at11/1111+2070436..2073045Ubiquitin-like protein 5, putative, expressed
LOC_Os11g04890OsAffx.18676.1.S1_at11/1111+2073422..2075729expressed protein
LOC_Os11g04900Os.51363.1.S1_at11/1111+2082440..2085141phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g04900OsAffx.6997.1.S1_x_at11/1111+2082440..2085141phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g04900Os.24619.2.S1_at11/1111+2082440..2085141phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g04900Os.24619.2.S1_x_at10/1111+2082440..2085141phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g04910Os.53331.2.S1_x_at9/1111+2086715..2089123expressed protein
LOC_Os11g04920Os.51435.1.S1_at10/1111+2093544..2096748expressed protein
LOC_Os11g04920OsAffx.30820.1.S1_at2/1111+2093544..2096748expressed protein
LOC_Os11g04920OsAffx.27670.1.S1_at1/1111+2093544..2096748expressed protein
LOC_Os11g04930Os.50597.1.S1_at11/1111+2099707..2102938SPRY domain containing protein, expressed
LOC_Os11g04940OsAffx.6998.1.S1_at11/1111+2106545..2107762Lipase family protein
LOC_Os11g04950Os.18447.1.S2_at11/1111+2108141..2114673expressed protein
LOC_Os11g04950Os.18447.1.S1_at10/1111+2108141..2114673expressed protein
LOC_Os11g04960OsAffx.6999.1.S1_at11/1111+2120656..2122507No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30820.1.S1_at--1075--1371Chr11:2095010..2095480 (25 bp)
AGACCTTGGCAATGTGCTATGTCAT
LOC_Os11g04920
OsAffx.30820.1.S1_at--897--5811NONE
GACCCTTCTGCCAAAAAAGTTCATG
NONE
OsAffx.30820.1.S1_at--496--2831Chr11:2096233..2096257 (25 bp)
AAGTTCATGTTGCTATCCGTTGAGA
LOC_Os11g04920
OsAffx.30820.1.S1_at--194--7031Chr11:2096893..2096917 (25 bp)
GTACATACGAGGTAGTGGCCCACAT
NONE
OsAffx.30820.1.S1_at--198--7551Chr11:2096907..2096931 (25 bp)
GTGGCCCACATTTCTATTTGAAAGG
NONE
OsAffx.30820.1.S1_at--596--10691Chr11:2096946..2097091 (25 bp)
TTGACTCCCTTAAAAAGCCTTTGAT
NONE
OsAffx.30820.1.S1_at--25--571Chr11:2097090..2097114 (25 bp)
ATCCTGGTCAACACTGCTGTCTTAG
NONE
OsAffx.30820.1.S1_at--172--3551Chr11:2097179..2097203 (25 bp)
CATCTCGTTGCTTCGGCAGGAGGTG
NONE
OsAffx.30820.1.S1_at--863--4911Chr11:2097294..2097318 (25 bp)
GCTTCGCACATCCTGTATCGGGTAG
NONE
OsAffx.30820.1.S1_at--755--491Chr11:2097310..2097334 (25 bp)
ATCGGGTAGGCCCATTCGACTACGA
NONE
OsAffx.30820.1.S1_at--143--111Chr11:2097323..2097347 (25 bp)
ATTCGACTACGAGCTGGCAGTGGCG
NONE
Target Sequence 
AGACCTTGGCAATGTGCTATGTCATGAAATGAAGCATGCTCGTAATGAAGGAGGACAAGTATTTGAAGGTGAGCTGGAAC
ACAAGAAGGCAAGAATGGCAGAAAGCTCACAGAACAAAGGAGAAGATGAAGAGACCCTTCTGCCAAAAAAGTTCATGTTG
CTATCCGTTGAGAATGGGAGTGGGTTCTGTTGGGGTGGAAAAGCTAATTCGTACATACGAGGTAGTGGCCCACATTTCTA
TTTGAAAGGGGAAAAAGTCTACTTTGACTCCCTTAAAAAGCCTTTGATCCTGGTCAACACTGCTGTCTTAGTTGGGGTAA
TGGGAAATAAAGGGCGGGGGCTTCTTGGCGGGTTTCTTCCACGTCCAGTGTTCCCCATCTCGTTGCTTCGGCAGGAGGTG
TGGCTGCGGCGGCTTCGTCGACGGCGAGGAGGGTGTAACCGTGTAAGAGCAGGGATAGTGAGCTCGCCGAGTGAGGGCTC
GTCGGCATCTGCTTCGCACATCCTGTATCGGGTAGGCCCATTCGACTACGAGCTGGCAGTGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30820.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis