Browse Element(s) Details


OsAffx.18676.1.S1_at

Description tigr:9639.m00403
TID=OsAffx.18676.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 66348-64527
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0489011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04820NANA11+2050147..2050502EF hand family protein
LOC_Os11g04830Os.50379.1.S1_at10/1111+2052139..2055052expressed protein
LOC_Os11g04840Os.24619.1.S1_at10/1111+2055584..2059141Phosphatidylinositol-4-phosphate 5-kinase 4, putative
LOC_Os11g04840Os.24619.2.S1_x_at2/1111+2055584..2059141Phosphatidylinositol-4-phosphate 5-kinase 4, putative
LOC_Os11g04840Os.24619.1.S2_at2/1111+2055584..2059141Phosphatidylinositol-4-phosphate 5-kinase 4, putative
LOC_Os11g04840OsAffx.6997.1.S1_x_at1/1111+2055584..2059141Phosphatidylinositol-4-phosphate 5-kinase 4, putative
LOC_Os11g04850NANA11+2061621..2062391DTW domain containing protein
LOC_Os11g04860Os.55208.1.S1_at11/1111+2063724..2065286Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os11g04870NANA11+2068920..2069681hypothetical protein
LOC_Os11g04880Os.38470.1.S1_at11/1111+2070436..2073045Ubiquitin-like protein 5, putative, expressed
LOC_Os11g04880Os.38470.1.S1_x_at11/1111+2070436..2073045Ubiquitin-like protein 5, putative, expressed
LOC_Os11g04890OsAffx.18676.1.S1_at11/1111+2073422..2075729expressed protein
LOC_Os11g04900Os.51363.1.S1_at11/1111+2082440..2085141phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g04900OsAffx.6997.1.S1_x_at11/1111+2082440..2085141phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g04900Os.24619.2.S1_at11/1111+2082440..2085141phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g04900Os.24619.2.S1_x_at10/1111+2082440..2085141phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g04910Os.53331.2.S1_x_at9/1111+2086715..2089123expressed protein
LOC_Os11g04920Os.51435.1.S1_at10/1111+2093544..2096748expressed protein
LOC_Os11g04920OsAffx.30820.1.S1_at2/1111+2093544..2096748expressed protein
LOC_Os11g04920OsAffx.27670.1.S1_at1/1111+2093544..2096748expressed protein
LOC_Os11g04930Os.50597.1.S1_at11/1111+2099707..2102938SPRY domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18676.1.S1_at--758--3651Chr11:2074755..2075046 (25 bp)
CTTCACCCAATTGTTCATGCGATTG
LOC_Os11g04890
OsAffx.18676.1.S1_at--728--633Chr11:2075084..2075108 (25 bp)
ATGCTTTGGTTGCTGCATGGTCAAA
LOC_Os11g04890
OsAffx.18676.1.S1_at--372--2111Chr11:2075115..2075139 (25 bp)
ACATGCATTGTTCTGCTTTGTAATT
LOC_Os11g04890
OsAffx.18676.1.S1_at--495--732Chr11:2075171..2075195 (25 bp)
ATGTTGAATCGTTGCACTACCGCGG
LOC_Os11g04890
OsAffx.18676.1.S1_at--487--4991Chr11:2075330..2075354 (25 bp)
GCATGTGAGCCGTTGGATTGTCTTG
LOC_Os11g04890
OsAffx.18676.1.S1_at--158--10771Chr11:2075347..2075371 (25 bp)
TTGTCTTGGACGGTGGATATTACTT
LOC_Os11g04890
OsAffx.18676.1.S1_at--932--6512Chr12:20077133..20077158 (24 bp)
GATATTACTTGACTGCACGCTGGTG
NONE
OsAffx.18676.1.S1_at--627--3351Chr11:2075377..2075401 (25 bp)
CACGCTGGTGCCTTCACGGTGTGAA
LOC_Os11g04890
OsAffx.18676.1.S1_at--1055--5293Chr11:2075399..2075423 (25 bp)
GAAGGCAGAGGATCCTAATCCCCAC
LOC_Os11g04890
OsAffx.18676.1.S1_at--311--3731Chr11:2075413..2075437 (25 bp)
CTAATCCCCACCAACAGAATTATGC
LOC_Os11g04890
OsAffx.18676.1.S1_at--831--7271Chr11:2075522..2075546 (25 bp)
GTCCAATTATGCTGACCAAGGCTAT
LOC_Os11g04890
Target Sequence 
CTTCACCCAATTGTTCATGCGATTGATGTTAACTGAAACTCATGAATTGCCTAATGGAAAGCATGCTTTGGTTGCTGCAT
GGTCAAATGGAATACATGCATTGTTCTGCTTTGTAATTGTAATAATGTTCCAAATCCCATACAACAAGCATGTTGAATCG
TTGCACTACCGCGGTGGCGGCGGCGTGGATGTGCATGTGAGCCGTTGGATTGTCTTGGACGGTGGATATTACTTGACTGC
ACGCTGGTGCCTTCACGGTGTGAAGGCAGAGGATCCTAATCCCCACCAACAGAATTATGCTGACATCCACGCACCCGTCG
GCTACTATGTGTTTGGATTCGGATATCGCGACATGGATGGTACCAAGGTGCACAAGGCATGGAGGTCCAATTATGCTGAC
CAAGGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18676.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis