Browse Element(s) Details


Os.55208.1.S1_at

Description gb:AK107669.1
DB_XREF= gi:32992878
TID=Os.55208.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55208 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-131-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-131-H07, full insert sequence.
FL= gb:AK107669.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0486011/11Indole-3-acetate beta-glucosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04790Os.27542.1.A1_at4/1111+2040146..2040911hypothetical protein
LOC_Os11g04800OsAffx.6995.1.S1_at11/1111+2042101..2046090hypothetical protein
LOC_Os11g04810NANA11+2047396..2047785hypothetical protein
LOC_Os11g04820NANA11+2050147..2050502EF hand family protein
LOC_Os11g04830Os.50379.1.S1_at10/1111+2052139..2055052expressed protein
LOC_Os11g04840Os.24619.1.S1_at10/1111+2055584..2059141Phosphatidylinositol-4-phosphate 5-kinase 4, putative
LOC_Os11g04840Os.24619.2.S1_x_at2/1111+2055584..2059141Phosphatidylinositol-4-phosphate 5-kinase 4, putative
LOC_Os11g04840Os.24619.1.S2_at2/1111+2055584..2059141Phosphatidylinositol-4-phosphate 5-kinase 4, putative
LOC_Os11g04840OsAffx.6997.1.S1_x_at1/1111+2055584..2059141Phosphatidylinositol-4-phosphate 5-kinase 4, putative
LOC_Os11g04850NANA11+2061621..2062391DTW domain containing protein
LOC_Os11g04860Os.55208.1.S1_at11/1111+2063724..2065286Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os11g04870NANA11+2068920..2069681hypothetical protein
LOC_Os11g04880Os.38470.1.S1_at11/1111+2070436..2073045Ubiquitin-like protein 5, putative, expressed
LOC_Os11g04880Os.38470.1.S1_x_at11/1111+2070436..2073045Ubiquitin-like protein 5, putative, expressed
LOC_Os11g04890OsAffx.18676.1.S1_at11/1111+2073422..2075729expressed protein
LOC_Os11g04900Os.51363.1.S1_at11/1111+2082440..2085141phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g04900OsAffx.6997.1.S1_x_at11/1111+2082440..2085141phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g04900Os.24619.2.S1_at11/1111+2082440..2085141phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g04900Os.24619.2.S1_x_at10/1111+2082440..2085141phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed
LOC_Os11g04910Os.53331.2.S1_x_at9/1111+2086715..2089123expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009920biological_processcell plate formation (sensu Magnoliophyta)
GO:0009524cellular_componentphragmoplast
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55208.1.S1_at--138--7651Chr11:2064285..2064309 (25 bp)
GGGAGCATACTCACATATAGCAAGC
LOC_Os11g04860
Os.55208.1.S1_at--822--1871Chr11:2064251..2064275 (25 bp)
ACGAGATATTACACGGCATGCAGGA
LOC_Os11g04860
Os.55208.1.S1_at--88--3271Chr11:2064111..2064135 (25 bp)
CAACTAGATGTGTTGTCCCATCCCT
LOC_Os11g04860
Os.55208.1.S1_at--248--3811Chr11:2064088..2064112 (25 bp)
CTCCGTGGGATGCTTTGTCACACAA
LOC_Os11g04860
Os.55208.1.S1_at--2--7731Chr11:2064060..2064084 (25 bp)
GGGTGGAACTCGACTTTAGAAGCCT
LOC_Os11g04860
Os.55208.1.S1_at--904--2651Chr11:2064041..2064065 (25 bp)
AAGCCTTGGAACTTGGTGTGCCCAT
LOC_Os11g04860
Os.55208.1.S1_at--120--7471Chr11:2064026..2064050 (25 bp)
GTGTGCCCATGGTTGCTGTGCCGAA
LOC_Os11g04860
Os.55208.1.S1_at--279--9131Chr11:2064013..2064037 (25 bp)
TGCTGTGCCGAATTGGTCAGACCAG
LOC_Os11g04860
Os.55208.1.S1_at--92--1391Chr11:2063995..2064019 (25 bp)
AGACCAGCCCACAATTGCATATCTT
LOC_Os11g04860
Os.55208.1.S1_at--1162--8231Chr11:2063949..2063973 (25 bp)
GGCACTAGAGTGTATCGCAATGACG
LOC_Os11g04860
Os.55208.1.S1_at--675--6171Chr11:2063782..2063806 (25 bp)
GAGGAGTCTCCAAATATTTGCCAAG
LOC_Os11g04860
Target Sequence 
GGGAGCATACTCACATATAGCAAGCGACAGGTAGACGAGATATTACACGGCATGCAGGAGTGTGAGTGGCCATTTTTGTG
GGTGGTGCGTAAGGATGGGCGTGAAGAAGATTTGAGCTATTTGGTGGATAACATTGATGACCATCACAATGGGATGGTGA
TCGAATGGTGTGACCAACTAGATGTGTTGTCCCATCCCTCCGTGGGATGCTTTGTCACACAATGCGGGTGGAACTCGACT
TTAGAAGCCTTGGAACTTGGTGTGCCCATGGTTGCTGTGCCGAATTGGTCAGACCAGCCCACAATTGCATATCTTGTGGA
GAAGGAATGGATGGTTGGCACTAGAGTGTATCGCAATGACGAAGGAGTAATAGTGGGGACAGAGTTGGCAAAGAGTGTCA
AGATTGTCATGGGAGACAATGAGGTAGCAACAAAGATAAGAGAGAGAGTAAATTCTTTCAAACATAAGATCCATGAGGAG
GCAATAAGAGGTGAAACAGGTCAGAGGAGTCTCCAAATATTTGCCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55208.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis