Browse Element(s) Details


OsAffx.27670.1.S1_at

Description tigr:9634.m01665
TID=OsAffx.27670.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1655011/11hypothetical protein
LOC_Os11g049201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16500OsAffx.27669.1.S1_at11/116+9466595..9466994hypothetical protein
LOC_Os06g16510NANA6+9471873..9472442transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16520NANA6+9480207..9483539transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16530NANA6+9484777..9485259transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16540Os.47463.1.S1_x_at6/116+9486309..9490006transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16540Os.14491.2.S1_x_at5/116+9486309..9490006transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16550OsAffx.27670.1.S1_at11/116+9491417..9492500hypothetical protein
LOC_Os06g16560OsAffx.15460.1.S1_at10/116+9495173..9499279hypothetical protein
LOC_Os06g16570NANA6+9515662..9518868transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27670.1.S1_at--369--7371Chr06:9492425..9492449 (25 bp)
GTGACAGGTGCTCATTTCTCTACCA
LOC_Os06g16550
OsAffx.27670.1.S1_at--312--10311Chr06:9492411..9492435 (25 bp)
TTTCTCTACCATGCCAGATTATCTG
LOC_Os06g16550
OsAffx.27670.1.S1_at--844--151Chr06:9492394..9492418 (25 bp)
ATTATCTGGATGGTGCTACTACTGT
LOC_Os06g16550
OsAffx.27670.1.S1_at--102--2511Chr06:9491657..9491681 (25 bp)
AACTTGGGAGCAGAATGCCCACTGA
LOC_Os06g16550
OsAffx.27670.1.S1_at--13--10831Chr06:9491563..9491643 (25 bp)
TTGTCCCAGCCAACTACATGTGAGT
LOC_Os06g16550
OsAffx.27670.1.S1_at--912--2111Chr06:9491548..9491571 (24 bp)
ACATGTGAGTCTCTACTGTCTGTCT
LOC_Os06g16550
OsAffx.27670.1.S1_at--553--9471Chr06:9491530..9491554 (25 bp)
TCTGTCTCTACTGGCCGTACTCAAG
LOC_Os06g16550
OsAffx.27670.1.S1_at--603--7011Chr06:9491514..9491538 (25 bp)
GTACTCAAGCTCCATACATGGTCCA
LOC_Os06g16550
OsAffx.27670.1.S1_at--529--811Chr06:9491497..9491521 (25 bp)
ATGGTCCAACTAGCTGGGCTGGCAC
LOC_Os06g16550
OsAffx.27670.1.S1_at--1023--7712Chr11:2095890..2095909 (20 bp)
GGTGGAGTGCATTTGTTCCCTTCAC
LOC_Os11g04920
OsAffx.27670.1.S1_at--1067--4151Chr06:9491447..9491471 (25 bp)
CGCCGTAATCTCCATGATCTGTGTG
LOC_Os06g16550
Target Sequence 
GTGACAGGTGCTCATTTCTCTACCATGCCAGATTATCTGGATGGTGCTACTACTGTAGAGGTGGGGAACATAAATGCATT
TAGTGTAGGGATAGGACTAGGAGGAATCGGAGAACTTGGGAGCAGAATGCCCACTGAGGCATGGTTGGAGTTGTCCCAGC
CAACTACATGTGAGTCTCTACTGTCTGTCTCTACTGGCCGTACTCAAGCTCCATACATGGTCCAACTAGCTGGGCTGGCA
CGGTGGAGTGCATTTGTTCCCTTCACCGCCGTAATCTCCATGATCTGTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27670.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis