Browse Element(s) Details


OsAffx.15460.1.S1_at

Description tigr:9634.m01666
TID=OsAffx.15460.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1656010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16510NANA6+9471873..9472442transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16520NANA6+9480207..9483539transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16530NANA6+9484777..9485259transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16540Os.47463.1.S1_x_at6/116+9486309..9490006transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16540Os.14491.2.S1_x_at5/116+9486309..9490006transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16550OsAffx.27670.1.S1_at11/116+9491417..9492500hypothetical protein
LOC_Os06g16560OsAffx.15460.1.S1_at10/116+9495173..9499279hypothetical protein
LOC_Os06g16570NANA6+9515662..9518868transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g16580Os.14491.2.S1_x_at4/116+9521337..9525055transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16580Os.47463.1.S1_x_at3/116+9521337..9525055transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15460.1.S1_at--998--1451Chr06:9499145..9499169 (25 bp)
AGAAGATCTCTCTGTGGAGAAGAAA
LOC_Os06g16560
OsAffx.15460.1.S1_at--1122--2411NONE
AAAACTATGTTGGACGCTAGCCAGA
NONE
OsAffx.15460.1.S1_at--361--5791Chr06:9496039..9496060 (22 bp)
GACGCTAGCCAGAAAATTCCGTGCT
LOC_Os06g16560
OsAffx.15460.1.S1_at--980--5491Chr06:9496028..9496052 (25 bp)
GAAAATTCCGTGCTGAATGCCCACC
LOC_Os06g16560
OsAffx.15460.1.S1_at--263--3031Chr06:9496013..9496037 (25 bp)
AATGCCCACCTGCAGCCGTGGATGT
LOC_Os06g16560
OsAffx.15460.1.S1_at--280--7991Chr06:9495894..9496018 (25 bp)
GGATGTTGCGGCTACACGTTGTCTC
LOC_Os06g16560
OsAffx.15460.1.S1_at--455--1891Chr06:9495879..9495901 (23 bp)
ACGTTGTCTCCGTGTGCGTCTCTTA
LOC_Os06g16560
OsAffx.15460.1.S1_at--313--7471Chr06:9495868..9495892 (25 bp)
GTGTGCGTCTCTTACACCCGGTGAG
LOC_Os06g16560
OsAffx.15460.1.S1_at--769--10471Chr06:9495857..9495881 (25 bp)
TTACACCCGGTGAGCGGCAGTGCAG
LOC_Os06g16560
OsAffx.15460.1.S1_at--49--1111Chr06:9495839..9495863 (25 bp)
AGTGCAGCTAAGGTATACGCGGATG
LOC_Os06g16560
OsAffx.15460.1.S1_at--1--2831Chr06:9495229..9495253 (25 bp)
AAGTTGGAACAATGTGACTGTCACA
LOC_Os06g16560
Target Sequence 
AGAAGATCTCTCTGTGGAGAAGAAATCGAAGAGAGATACCGGGAGGTACCAAAAACTATGTTGGACGCTAGCCAGAAAAT
TCCGTGCTGAATGCCCACCTGCAGCCGTGGATGTTGCGGCTACACGTTGTCTCCGTGTGCGTCTCTTACACCCGGTGAGC
GGCAGTGCAGCTAAGGTATACGCGGATGATGAAGATGGCGCACGAGGGCAAGCAAACAAGGCTTGGAAGTTGGAACAATG
TGACTGTCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15460.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis