CREP Browser

Description

tigr:9634.m01660
TID=OsAffx.27669.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g16500	11/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g16470	NA	NA	6	+	9456444..9457936	retrotransposon, putative, centromere-specific
LOC_Os06g16480	OsAffx.27668.1.S1_at	11/11	6	+	9460856..9461401	hypothetical protein
LOC_Os06g16489	NA	NA	6	+	9463738..9464046	NA
LOC_Os06g16500	OsAffx.27669.1.S1_at	11/11	6	+	9466595..9466994	hypothetical protein
LOC_Os06g16510	NA	NA	6	+	9471873..9472442	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16520	NA	NA	6	+	9480207..9483539	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16530	NA	NA	6	+	9484777..9485259	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16540	Os.47463.1.S1_x_at	6/11	6	+	9486309..9490006	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16540	Os.14491.2.S1_x_at	5/11	6	+	9486309..9490006	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16550	OsAffx.27670.1.S1_at	11/11	6	+	9491417..9492500	hypothetical protein

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27669.1.S1_at--409--707	1	Chr06:9466757..9466947 (25 bp)	GTCCTCCAACGGATTCCCTCGTGGA	LOC_Os06g16500
OsAffx.27669.1.S1_at--375--257	1	Chr06:9466750..9466771 (22 bp)	AACGGATTCCCTCGTGGATGCCGGC	LOC_Os06g16500
OsAffx.27669.1.S1_at--452--395	1	Chr06:9466748..9466771 (24 bp)	CGGATTCCCTCGTGGATGCCGGCAA	LOC_Os06g16500
OsAffx.27669.1.S1_at--364--621	1	Chr06:9466714..9466738 (25 bp)	GAGGCTGCCCTAGCGATGACTGATG	LOC_Os06g16500
OsAffx.27669.1.S1_at--673--833	1	Chr06:9466712..9466736 (25 bp)	GGCTGCCCTAGCGATGACTGATGGT	LOC_Os06g16500
OsAffx.27669.1.S1_at--316--383	1	Chr06:9466710..9466734 (25 bp)	CTGCCCTAGCGATGACTGATGGTGG	LOC_Os06g16500
OsAffx.27669.1.S1_at--898--427	1	Chr06:9466706..9466730 (25 bp)	CCTAGCGATGACTGATGGTGGCGTA	LOC_Os06g16500
OsAffx.27669.1.S1_at--907--887	2	Chr06:9466694..9466718 (25 bp)	TGATGGTGGCGTAGGCGCTGCCGAA	LOC_Os06g16500
OsAffx.27669.1.S1_at--113--693	1	Chr06:9466684..9466708 (25 bp)	GTAGGCGCTGCCGAAGGCGTTTGCG	LOC_Os06g16500
OsAffx.27669.1.S1_at--229--423	1	Chr06:9466674..9466698 (25 bp)	CCGAAGGCGTTTGCGCGGCAGCGGG	LOC_Os06g16500
OsAffx.27669.1.S1_at--258--901	1	Chr06:9466647..9466671 (25 bp)	TGCAAGGTGGTGCTGCCACCGGAGT	LOC_Os06g16500

Target Sequence

GTCCTCCAACGGATTCCCTCGTGGATGCCGGCAACCTGGGGCGGAGGCTGCCCTAGCGATGACTGATGGTGGCGTAGGCG
CTGCCGAAGGCGTTTGCGCGGCAGCGGGGCTGCAAGGTGGTGCTGCCACCGGAGT

Expression Profiles

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Browse Element(s) Details