Browse Element(s) Details


OsAffx.27668.1.S1_at

Description tigr:9634.m01658
TID=OsAffx.27668.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1648011/11hypothetical protein
LOC_Os06g111601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16470NANA6+9456444..9457936retrotransposon, putative, centromere-specific
LOC_Os06g16480OsAffx.27668.1.S1_at11/116+9460856..9461401hypothetical protein
LOC_Os06g16489NANA6+9463738..9464046NA
LOC_Os06g16500OsAffx.27669.1.S1_at11/116+9466595..9466994hypothetical protein
LOC_Os06g16510NANA6+9471873..9472442transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16520NANA6+9480207..9483539transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16530NANA6+9484777..9485259transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16540Os.47463.1.S1_x_at6/116+9486309..9490006transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16540Os.14491.2.S1_x_at5/116+9486309..9490006transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27668.1.S1_at--733--1753Chr12:4331581..4331600 (20 bp)
ACCTCGAGCGCCGCTAGGATGTCGA
NONE
OsAffx.27668.1.S1_at--386--8952Chr06:5853192..5853216 (25 bp)
TGAAGTGCCGCGTGGTCGAACGGGC
NONE
OsAffx.27668.1.S1_at--207--9351Chr06:9461250..9461274 (25 bp)
TCGAACGGGCTTGTTGGCGACGGAA
LOC_Os06g16480
OsAffx.27668.1.S1_at--124--10871Chr06:9461237..9461261 (25 bp)
TTGGCGACGGAAGATCGCCGCTGTC
LOC_Os06g16480
OsAffx.27668.1.S1_at--1071--532Chr06:5853233..5853257 (25 bp)
ATCGCCGCTGTCATACTATTGCTGT
NONE
OsAffx.27668.1.S1_at--846--4732Chr06:5853239..5853263 (25 bp)
GCTGTCATACTATTGCTGTTGCGGC
NONE
OsAffx.27668.1.S1_at--911--313Chr06:5853245..5853269 (25 bp)
ATACTATTGCTGTTGCGGCTACCAC
NONE
OsAffx.27668.1.S1_at--1110--6671Chr06:9461201..9461225 (25 bp)
GTTGCGGCTACCACTGCGAGCAGCG
LOC_Os06g16480
OsAffx.27668.1.S1_at--1127--831Chr06:9461172..9461196 (25 bp)
ATGGAGACGTCAAGCTTGCCTTCTC
LOC_Os06g16480
OsAffx.27668.1.S1_at--78--7093Chr12:4331728..4331748 (21 bp)
GTCAAGCTTGCCTTCTCCACCATGG
NONE
OsAffx.27668.1.S1_at--580--3932Chr06:5853436..5853460 (25 bp)
CGGCGGCAGTAACGGACGGTGGTCA
LOC_Os06g11160
Target Sequence 
ACCTCGAGCGCCGCTAGGATGTCGAGCCCGACCCCACCCACCGCTGCGCGGCGACGACGCCGCGTGAAGTGCCGCGTGGT
CGAACGGGCTTGTTGGCGACGGAAGATCGCCGCTGTCATACTATTGCTGTTGCGGCTACCACTGCGAGCAGCGGGCGATG
GAGACGTCAAGCTTGCCTTCTCCACCATGGGTGNGACACGTAGAGAGAGAGGAGGANATCCCNTTGACCGGCCGCTTGGT
GAACTCCGCGGCGTTGAGGATGATGGTAGGGACGGGGTCGGTGGCAGCGGAGGCGGGAAGGCGAGGGCCGGCGGCAGTAA
CGGACGGTGGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27668.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis