Browse Element(s) Details

Os.11301.1.S1_at

Description

gb:AK070778.1
DB_XREF= gi:32980801
TID=Os.11301.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11301 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023069E14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023069E14, full insert sequence.
FL= gb:AK070778.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os11g04560	11/11	EF hand family protein, expressed
LOC_Os12g04360	9/11	EF hand family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os11g04540	OsAffx.19485.1.S1_s_at	11/11	11	+	1916489..1917513	Sulfotransferase domain containing protein, expressed
LOC_Os11g04540	OsAffx.19485.1.S1_at	10/11	11	+	1916489..1917513	Sulfotransferase domain containing protein, expressed
LOC_Os11g04540	OsAffx.3105.1.S1_at	1/11	11	+	1916489..1917513	Sulfotransferase domain containing protein, expressed
LOC_Os11g04550	OsAffx.30816.1.S1_s_at	11/11	11	+	1919916..1920932	Sulfotransferase domain containing protein
LOC_Os11g04550	OsAffx.30816.2.S1_at	11/11	11	+	1919916..1920932	Sulfotransferase domain containing protein
LOC_Os11g04560	Os.11301.1.S1_at	11/11	11	+	1930436..1931206	EF hand family protein, expressed
LOC_Os11g04560	Os.11301.1.S1_x_at	11/11	11	+	1930436..1931206	EF hand family protein, expressed
LOC_Os11g04570	OsAffx.31575.1.S1_x_at	11/11	11	+	1932987..1937558	GRAS family transcription factor containing protein, expressed
LOC_Os11g04580	OsAffx.24964.1.S1_s_at	11/11	11	+	1939369..1940190	hypothetical protein
LOC_Os11g04580	OsAffx.24964.1.S1_x_at	11/11	11	+	1939369..1940190	hypothetical protein
LOC_Os11g04580	OsAffx.24964.2.S1_s_at	7/11	11	+	1939369..1940190	hypothetical protein
LOC_Os11g04580	OsAffx.24964.2.S1_x_at	3/11	11	+	1939369..1940190	hypothetical protein
LOC_Os11g04590	OsAffx.19487.1.S1_x_at	11/11	11	+	1941620..1943002	GRAS family transcription factor containing protein
LOC_Os11g04600	Os.49532.1.S1_s_at	4/11	11	+	1950555..1953193	ankyrin repeat family protein, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0009408	biological_process	response to heat
GO:0009409	biological_process	response to cold
GO:0009612	biological_process	response to mechanical stimulus
GO:0009646	biological_process	response to absence of light
GO:0009733	biological_process	response to auxin stimulus
GO:0009737	biological_process	response to abscisic acid stimulus
GO:0010038	biological_process	response to metal ion
GO:0019722	biological_process	calcium-mediated signaling
GO:0042542	biological_process	response to hydrogen peroxide
GO:0048574	biological_process	long-day photoperiodism, flowering
GO:0005509	molecular_function	calcium ion binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.11301.1.S1_at--445--183	1	Chr11:1930609..1930633 (25 bp)	ACGCCGAGATCCGTGTTGCCGGCGT	LOC_Os11g04560
Os.11301.1.S1_at--955--925	1	Chr11:1930651..1930675 (25 bp)	TCCGGCACCAAAAAGCCGGCGGCGG	LOC_Os11g04560
Os.11301.1.S1_at--1056--449	2	Chr12:1850662..1850686 (25 bp)	GCCGTGACGCGGGAGGACCTGGAGG	LOC_Os12g04360
Os.11301.1.S1_at--893--795	2	Chr12:1850699..1850723 (25 bp)	GGATCGTGTCGAGCAAGGAGGAGCT	LOC_Os12g04360
Os.11301.1.S1_at--847--63	2	Chr12:1851047..1851071 (25 bp)	ATGCATGTTAATCGATCGTCTCCTG	LOC_Os12g04360
Os.11301.1.S1_at--874--351	2	Chr12:1851050..1851074 (25 bp)	CATGTTAATCGATCGTCTCCTGTAT	LOC_Os12g04360
Os.11301.1.S1_at--648--949	2	Chr12:1851106..1851126 (21 bp)	TCTCCACTGATTTCTTTTGTTCTCT	LOC_Os12g04360
Os.11301.1.S1_at--748--653	2	Chr12:1851110..1851134 (25 bp)	GATTTCTTTTGTTCTCTTTGTACGT	LOC_Os12g04360
Os.11301.1.S1_at--374--1039	2	Chr12:1851116..1851140 (25 bp)	TTTTGTTCTCTTTGTACGTAGTACG	LOC_Os12g04360
Os.11301.1.S1_at--767--699	2	Chr12:1851129..1851153 (25 bp)	GTACGTAGTACGAGTTTCACAGAAG	LOC_Os12g04360
Os.11301.1.S1_at--323--535	2	Chr12:1851150..1851174 (25 bp)	GAAGAAATGAACAGAACGGTCAGTT	LOC_Os12g04360

Target Sequence

ACGCCGAGATCCGTGTTGCCGGCGTCGGCGGCGGCGTCCTCCTCCGGCACCAAAAAGCCGGCGGCGGTGGCCGTGACGCG
GGAGGACCTGGAGGTGGCCCTGCGGAGGATCGTGTCGAGCAAGGAGGAGCTGGCCGCGATGCTCGCCGAGGCGGAGTGCG
CCGGGGAGCTCGTGCTGGAGGAGATCGCGGCCGCNGCGGCGGACGAGGGCGAGCTGAAGGAGACGTTCGCGGTGTTCGAC
GCCGACGGGGACGGGAGGATCTCCGCCGAGGAGCTCCGCGCCGTGCTCGCNTCGCTCGGCGACGAGCTCTGCTCCGTCGA
CGACTGCCGCCGCATGATCGGCGGCGTGGACACCGACGGCGACGGGTTCGTCTGCTTCGACGAGTTCGCCCGCATGATGA
TGTNTGGCNGCGCGTGATTATATATNGGTTANTAGGTTTTGATCGATGTACGTNATGCATGTTAATCGATCGTCTCCTGT
ATNTACGTGTCGTTCNTNTGCTGTTCATNGTCTCCACTGATTTCTTTTGTTCTCTTTGTACGTAGTACGAGTTTCACAGA
AGAAATGAACAGAACGGTCAGTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis