Browse Element(s) Details


OsAffx.19485.1.S1_at

Description tigr:9639.m00366
TID=OsAffx.19485.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Sulfotransferase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0454010/11Sulfotransferase domain containing protein, expressed
LOC_Os11g045301/11Sulfotransferase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04520Os.26409.3.S1_s_at11/1111+1893743..1897887TAP42-like family protein, expressed
LOC_Os11g04520Os.26409.1.S1_a_at11/1111+1893743..1897887TAP42-like family protein, expressed
LOC_Os11g04520Os.26409.2.S1_s_at11/1111+1893743..1897887TAP42-like family protein, expressed
LOC_Os11g04530OsAffx.31574.2.S1_at8/1111+1898425..1901445Sulfotransferase domain containing protein
LOC_Os11g04530OsAffx.31574.1.S1_at8/1111+1898425..1901445Sulfotransferase domain containing protein
LOC_Os11g04530OsAffx.19485.1.S1_at1/1111+1898425..1901445Sulfotransferase domain containing protein
LOC_Os11g04540OsAffx.19485.1.S1_s_at11/1111+1916489..1917513Sulfotransferase domain containing protein, expressed
LOC_Os11g04540OsAffx.19485.1.S1_at10/1111+1916489..1917513Sulfotransferase domain containing protein, expressed
LOC_Os11g04540OsAffx.3105.1.S1_at1/1111+1916489..1917513Sulfotransferase domain containing protein, expressed
LOC_Os11g04550OsAffx.30816.1.S1_s_at11/1111+1919916..1920932Sulfotransferase domain containing protein
LOC_Os11g04550OsAffx.30816.2.S1_at11/1111+1919916..1920932Sulfotransferase domain containing protein
LOC_Os11g04560Os.11301.1.S1_at11/1111+1930436..1931206EF hand family protein, expressed
LOC_Os11g04560Os.11301.1.S1_x_at11/1111+1930436..1931206EF hand family protein, expressed
LOC_Os11g04570OsAffx.31575.1.S1_x_at11/1111+1932987..1937558GRAS family transcription factor containing protein, expressed
LOC_Os11g04580OsAffx.24964.1.S1_s_at11/1111+1939369..1940190hypothetical protein
LOC_Os11g04580OsAffx.24964.1.S1_x_at11/1111+1939369..1940190hypothetical protein
LOC_Os11g04580OsAffx.24964.2.S1_s_at7/1111+1939369..1940190hypothetical protein
LOC_Os11g04580OsAffx.24964.2.S1_x_at3/1111+1939369..1940190hypothetical protein
LOC_Os11g04590OsAffx.19487.1.S1_x_at11/1111+1941620..1943002GRAS family transcription factor containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0008146molecular_functionsulfotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19485.1.S1_at--199--10691Chr11:1916901..1916999 (25 bp)
TTGGCACTTCTGGAACAAAGCACGT
LOC_Os11g04540
OsAffx.19485.1.S1_at--233--8511Chr11:1916900..1916998 (25 bp)
TGGCACTTCTGGAACAAAGCACGTC
LOC_Os11g04540
OsAffx.19485.1.S1_at--400--5111Chr11:1916898..1916996 (25 bp)
GCACTTCTGGAACAAAGCACGTCCT
LOC_Os11g04540
OsAffx.19485.1.S1_at--42--3311NONE
CACTTCTGGAACAAAGCACGTCCTC
NONE
OsAffx.19485.1.S1_at--1099--2031Chr11:1916896..1916994 (25 bp)
ACTTCTGGAACAAAGCACGTCCTCA
LOC_Os11g04540
OsAffx.19485.1.S1_at--593--10611Chr11:1916894..1916992 (25 bp)
TTCTGGAACAAAGCACGTCCTCAGC
LOC_Os11g04540
OsAffx.19485.1.S1_at--944--9451Chr11:1916893..1916991 (25 bp)
TCTGGAACAAAGCACGTCCTCAGCT
LOC_Os11g04540
OsAffx.19485.1.S1_at--798--7651Chr11:1916662..1916686 (25 bp)
GGGATGACTAATTTCACCGAGAAAG
LOC_Os11g04540
OsAffx.19485.1.S1_at--765--6251Chr11:1916660..1916684 (25 bp)
GATGACTAATTTCACCGAGAAAGAC
LOC_Os11g04540
OsAffx.19485.1.S1_at--423--9751Chr11:1916654..1916678 (25 bp)
TAATTTCACCGAGAAAGACGTGCCA
LOC_Os11g04540
OsAffx.19485.1.S1_at--673--1892Chr11:1916637..1916661 (25 bp)
ACGTGCCAAACAACACGGTCTTCCG
LOC_Os11g04540
Target Sequence 
TTGGCACTTCTGGAACAAAGCACGTCCTCAGCTACTGGAATTGGCATGTCGAGAGGCCAAGCGAGGTACTCTTCTTGACC
TACGAGGAGCTCGCCGCTGACACTCTCGGCCATCTGAGATGCCTCGCCGAGTTCGTCGGACGCCCATTCACAATGGAGGA
GCAGGATGCCGGAGTGGATAGAAAGATCGTGGAGATTTGTGCCATGGAAAGTTTATCGGGGTTAGAGATGAATCAGTCGG
GGATGACTAATTTCACCGAGAAAGACGTGCCAAACAACACGGTCTTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19485.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis