Browse Element(s) Details


OsAffx.3105.1.S1_at

Description tigr:9630.m05844
TID=OsAffx.3105.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=sugar transporter protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5853011/11major facilitator superfamily protein, expressed
LOC_Os11g045401/11Sulfotransferase domain containing protein, expressed
LOC_Os12g043401/11Sulfotransferase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58480Os.52194.1.S1_at11/112+35749077..35755347Sucrose synthase 2, putative, expressed
LOC_Os02g58480Os.51168.1.S1_at11/112+35749077..35755347Sucrose synthase 2, putative, expressed
LOC_Os02g58490Os.7419.1.S1_a_at11/112+35755309..35762519PINHEAD protein, putative, expressed
LOC_Os02g58500Os.4603.1.S1_at11/112+35764745..35766255phospholipase A2, putative, expressed
LOC_Os02g58510Os.27193.1.S1_at11/112+35766329..35768918homoserine kinase family protein, expressed
LOC_Os02g58520Os.24128.1.A1_at11/112+35769161..35771397Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os02g58530OsAffx.3105.1.S1_at11/112+35773561..35775519major facilitator superfamily protein, expressed
LOC_Os02g58540OsAffx.24924.1.S1_at11/112+35777415..35778267Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g58550Os.47401.1.A1_s_at11/112+35778974..35781951chloroplast channel forming outer membrane protein, putative, expressed
LOC_Os02g58550Os.18407.1.S1_at11/112+35778974..35781951chloroplast channel forming outer membrane protein, putative, expressed
LOC_Os02g58560OsAffx.24925.1.S1_at11/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560OsAffx.24925.1.S1_x_at11/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.50372.1.S2_x_at11/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.17864.1.S1_at11/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.38768.1.A1_at10/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.50372.1.S1_at10/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.38768.1.A1_s_at10/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58570Os.19421.1.S1_at11/112+35798862..35800671PRLI-interacting factor A, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005337molecular_functionnucleoside transporter activity
GO:0005351molecular_functionsugar porter activity
GO:0008146molecular_functionsulfotransferase activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3105.1.S1_at--290--8371Chr02:35774989..35775013 (25 bp)
GGCGTCACCACGCTGCTGATGCTGC
LOC_Os02g58530
OsAffx.3105.1.S1_at--288--631Chr02:35775007..35775031 (25 bp)
ATGCTGCCCAGCATCGGCGTGGCCA
LOC_Os02g58530
OsAffx.3105.1.S1_at--337--3531Chr02:35775030..35775054 (25 bp)
CATGCGGCTCATGGACGTGTCCGGG
LOC_Os02g58530
OsAffx.3105.1.S1_at--765--3951Chr02:35775058..35775082 (25 bp)
CGGAGCCTGCTCCTGTGGACGATCC
LOC_Os02g58530
OsAffx.3105.1.S1_at--994--9091Chr02:35775065..35775089 (25 bp)
TGCTCCTGTGGACGATCCCGCTGCT
LOC_Os02g58530
OsAffx.3105.1.S1_at--594--7493Chr02:35775175..35775199 (25 bp)
GTGGTGTACCTGTGCTGCTTCGTCA
LOC_Os02g58530
OsAffx.3105.1.S1_at--618--7751Chr02:35775177..35775201 (25 bp)
GGTGTACCTGTGCTGCTTCGTCATG
LOC_Os02g58530
OsAffx.3105.1.S1_at--113--6051Chr02:35775235..35775259 (25 bp)
GAGATATTCCCCACGCGCGTGCGTG
LOC_Os02g58530
OsAffx.3105.1.S1_at--193--6691Chr02:35775403..35775427 (25 bp)
GTTGCGCTGCGGGTGCCCGAGACCA
LOC_Os02g58530
OsAffx.3105.1.S1_at--756--5691Chr02:35775454..35775478 (25 bp)
GACTTCTTCAACGTCGGAGCCAAAG
LOC_Os02g58530
OsAffx.3105.1.S1_at--625--9551Chr02:35775458..35775482 (25 bp)
TCTTCAACGTCGGAGCCAAAGGGAC
LOC_Os02g58530
Target Sequence 
GGCGTCACCACGCTGCTGATGCTGCCCAGCATCGGCGTGGCCATGCGGCTCATGGACGTGTCCGGGCGGCGGAGCCTGCT
CCTGTGGACGATCCCGCTGCTGGTGGCGTCGCTGGCGGTGCTGGTGGCGGCGAGCGTGGCGCCGATGGCGGCGGCGGCGC
ACGCGGCGGTGTGCACGGGGAGCGTGGTGGTGTACCTGTGCTGCTTCGTCATGGGGTTCGGCCCCATCCCCAACATCCTG
TGCGCCGAGATATTCCCCACGCGCGTGCGTGGCCTCTGCATCGCCATCTGCTCGCTCGCCTTCTGGCTCGCCGACATCGC
CGTCACCTACACCCTCCCCGTCATGCTCGCCTCCCTCGGCCTCGCCGGCCTCTTCGCCATCTACGCCGCCGTCTGCTGCG
TCGCGCTCGTCTTCGTTGCGCTGCGGGTGCCCGAGACCAAGGGCCTCCCGCTCGAGGTCATCATCGACTTCTTCAACGTC
GGAGCCAAAGGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3105.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis