Browse Element(s) Details


Os.27193.1.S1_at

Description gb:AK060519.1
DB_XREF= gi:32970537
TID=Os.27193.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27193 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-020-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-020-B10, full insert sequence.
FL= gb:AK060519.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5851011/11homoserine kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58460Os.10719.1.S1_at11/112+35741366..35745423Beta-catenin-like protein 1, putative, expressed
LOC_Os02g58470Os.40059.1.S1_at11/112+35745597..35747736expressed protein
LOC_Os02g58480Os.52194.1.S1_at11/112+35749077..35755347Sucrose synthase 2, putative, expressed
LOC_Os02g58480Os.51168.1.S1_at11/112+35749077..35755347Sucrose synthase 2, putative, expressed
LOC_Os02g58490Os.7419.1.S1_a_at11/112+35755309..35762519PINHEAD protein, putative, expressed
LOC_Os02g58500Os.4603.1.S1_at11/112+35764745..35766255phospholipase A2, putative, expressed
LOC_Os02g58510Os.27193.1.S1_at11/112+35766329..35768918homoserine kinase family protein, expressed
LOC_Os02g58520Os.24128.1.A1_at11/112+35769161..35771397Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os02g58530OsAffx.3105.1.S1_at11/112+35773561..35775519major facilitator superfamily protein, expressed
LOC_Os02g58540OsAffx.24924.1.S1_at11/112+35777415..35778267Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g58550Os.47401.1.A1_s_at11/112+35778974..35781951chloroplast channel forming outer membrane protein, putative, expressed
LOC_Os02g58550Os.18407.1.S1_at11/112+35778974..35781951chloroplast channel forming outer membrane protein, putative, expressed
LOC_Os02g58560OsAffx.24925.1.S1_at11/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560OsAffx.24925.1.S1_x_at11/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.50372.1.S2_x_at11/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.17864.1.S1_at11/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.38768.1.A1_at10/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.50372.1.S1_at10/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560Os.38768.1.A1_s_at10/112+35784293..35798625glycosyl transferase family 48 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009086biological_processmethionine biosynthesis
GO:0009088biological_processthreonine biosynthesis
GO:0009570cellular_componentchloroplast stroma
GO:0004413molecular_functionhomoserine kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27193.1.S1_at--247--8831Chr02:35767262..35767286 (25 bp)
TGATTCCTGGCATGGCTGCGGTCAA
LOC_Os02g58510
Os.27193.1.S1_at--218--5091Chr02:35767319..35767343 (25 bp)
GCACCATCAGTGGAGCAGGGCCAAC
LOC_Os02g58510
Os.27193.1.S1_at--856--2551Chr02:35767341..35767365 (25 bp)
AACTGCTGTGGCTGTCATTGACGGG
LOC_Os02g58510
Os.27193.1.S1_at--574--4391Chr02:35767411..35767435 (25 bp)
GCCAATGCCGGCAATCTCAAAGCAA
LOC_Os02g58510
Os.27193.1.S1_at--547--4851Chr02:35767438..35767462 (25 bp)
GCTACTGTTGCTCAGCTCGATAGAG
LOC_Os02g58510
Os.27193.1.S1_at--786--6051Chr02:35767460..35767484 (25 bp)
GAGTTGGTGCCAGGGTTATCTCTAC
LOC_Os02g58510
Os.27193.1.S1_at--1058--10411Chr02:35767475..35767499 (25 bp)
TTATCTCTACCTCCACTTTGGAGTA
LOC_Os02g58510
Os.27193.1.S1_at--170--891Chr02:35768610..35768634 (25 bp)
AGGACTGCTCCGGTAGGTCAAATTT
LOC_Os02g58510
Os.27193.1.S1_at--807--8511Chr02:35768634..35768658 (25 bp)
TGGAATGGCTCACATGGACACTAGT
LOC_Os02g58510
Os.27193.1.S1_at--1121--5131Chr02:35768754..35768778 (25 bp)
GCAAACTGATTCGTGCCGGCAATTG
LOC_Os02g58510
Os.27193.1.S1_at--654--391Chr02:35768805..35768829 (25 bp)
ATCACCTGGCGAGGCGTAGCTAGGA
LOC_Os02g58510
Target Sequence 
TGATTCCTGGCATGGCTGCGGTCAAGGCCGCGGCGTTGGAAGCTGGGGCATTGGGCTGCACCATCAGTGGAGCAGGGCCA
ACTGCTGTGGCTGTCATTGACGGGGAGGAGAAGGGCGAGGAGGTTGGCCGGAGGATGGTGGAGGCATTCGCCAATGCCGG
CAATCTCAAAGCAACAGCTACTGTTGCTCAGCTCGATAGAGTTGGTGCCAGGGTTATCTCTACCTCCACTTTGGAGTAGG
AAGATCTGGGAGGACTGCTCCGGTAGGTCAAATTTGGAATGGCTCACATGGACACTAGTGGGAGGAGAAGAAGGGGGGAT
TGGTGTGTTTTGTAATTCCTGGGCTGACCAGAACGATTGTCAGTCAGTTGGGTTGTGAATTGTGTGATGTAGTAGCAAAC
TGATTCGTGCCGGCAATTGAATTGCAATAAGCTAGTGGTTGCAGCATCACCTGGCGAGGCGTAGCTAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27193.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis