Browse Element(s) Details


Os.52194.1.S1_at

Description gb:AK065549.1
DB_XREF= gi:32975567
TID=Os.52194.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52194 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013028P05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013028P05, full insert sequence.
FL= gb:AK065549.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5848011/11Sucrose synthase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58410Os.27842.1.S1_at11/112+35712181..35724680expressed protein
LOC_Os02g58420NANA2+35725387..35725647hypothetical protein
LOC_Os02g58430OsAffx.13097.1.S1_s_at11/112+35726314..35731898transposon protein, putative, Mutator sub-class
LOC_Os02g58440Os.27604.1.S1_at11/112+35733119..35737451Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g58450Os.33786.1.S1_at11/112+35734968..35738793Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os02g58450Os.17160.1.S1_s_at3/112+35734968..35738793Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os02g58450OsAffx.13616.1.S1_x_at3/112+35734968..35738793Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os02g58460Os.10719.1.S1_at11/112+35741366..35745423Beta-catenin-like protein 1, putative, expressed
LOC_Os02g58470Os.40059.1.S1_at11/112+35745597..35747736expressed protein
LOC_Os02g58480Os.52194.1.S1_at11/112+35749077..35755347Sucrose synthase 2, putative, expressed
LOC_Os02g58480Os.51168.1.S1_at11/112+35749077..35755347Sucrose synthase 2, putative, expressed
LOC_Os02g58490Os.7419.1.S1_a_at11/112+35755309..35762519PINHEAD protein, putative, expressed
LOC_Os02g58500Os.4603.1.S1_at11/112+35764745..35766255phospholipase A2, putative, expressed
LOC_Os02g58510Os.27193.1.S1_at11/112+35766329..35768918homoserine kinase family protein, expressed
LOC_Os02g58520Os.24128.1.A1_at11/112+35769161..35771397Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os02g58530OsAffx.3105.1.S1_at11/112+35773561..35775519major facilitator superfamily protein, expressed
LOC_Os02g58540OsAffx.24924.1.S1_at11/112+35777415..35778267Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g58550Os.47401.1.A1_s_at11/112+35778974..35781951chloroplast channel forming outer membrane protein, putative, expressed
LOC_Os02g58550Os.18407.1.S1_at11/112+35778974..35781951chloroplast channel forming outer membrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005986biological_processsucrose biosynthesis
GO:0009409biological_processresponse to cold
GO:0009413biological_processresponse to flooding
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016157molecular_functionsucrose synthase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52194.1.S1_at--564--8191Chr02:35754365..35754389 (25 bp)
GGAAGACCTCATCTACTGGAGCAAG
LOC_Os02g58480
Os.52194.1.S1_at--1065--8531Chr02:35754381..35754405 (25 bp)
TGGAGCAAGATGTCCACCGCTGGAC
LOC_Os02g58480
Os.52194.1.S1_at--1045--4711Chr02:35754399..35754423 (25 bp)
GCTGGACTCCAACGCATCTATGAGT
LOC_Os02g58480
Os.52194.1.S1_at--537--8891Chr02:35754419..35754649 (25 bp)
TGAGTGTTACACGTGGCAGATCTAT
LOC_Os02g58480
Os.52194.1.S1_at--48--251Chr02:35754677..35754701 (25 bp)
ATATATGGCTTCTGGAGGACTCTAG
LOC_Os02g58480
Os.52194.1.S1_at--77--2711Chr02:35754717..35754741 (25 bp)
AAGCTAAACAGCACTACCTACACAT
LOC_Os02g58480
Os.52194.1.S1_at--128--5291Chr02:35754855..35754879 (25 bp)
GAATGTGCCAACACTGGGCGAACAA
LOC_Os02g58480
Os.52194.1.S1_at--803--2211Chr02:35754885..35754909 (25 bp)
ACAACCTACAGAGAGCGCAGAGCCT
LOC_Os02g58480
Os.52194.1.S1_at--479--2511Chr02:35754998..35755022 (25 bp)
AACATTTGTCGTTTGAGCGCTGCAG
LOC_Os02g58480
Os.52194.1.S1_at--924--7971Chr02:35755037..35755161 (25 bp)
GGATCCAGAGGATTGCAACCAACTT
LOC_Os02g58480
Os.52194.1.S1_at--487--4351Chr02:35755178..35755202 (25 bp)
CCAGCCTCCAATTTCTCAACAGATG
LOC_Os02g58480
Target Sequence 
GGAAGACCTCATCTACTGGAGCAAGATGTCCACCGCTGGACTCCAACGCATCTATGAGTGTTACACGTGGCAGATCTATG
CAACCAAAGTTCTGAACATGGCATCAATATATGGCTTCTGGAGGACTCTAGACAAGGAAGAAAGACAAGCTAAACAGCAC
TACCTACACATGTTCTATAATCTTCAATTTAGGAAGTTGGCAAAGAATGTGCCAACACTGGGCGAACAACCAGCACAACC
TACAGAGAGCGCAGAGCCTAATAGGATCATACCAAGACCCAAAGAAAGGCAAGTGTGCCCATTCTTACGAAATTTACTGA
AGAAAGAGACAGGGAACAACTGACTGAAACATTTGTCGTTTGAGCGCTGCAGAAGGACGCAAATAAGGATCCAGAGGATT
GCAACCAACTTACTTGGACCACTGCTCCCAGCCTCCAATTTCTCAACAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52194.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis