Browse Element(s) Details


OsAffx.13616.1.S1_x_at

Description tigr:9632.m00082
TID=OsAffx.13616.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Uncharacterized ACR, COG1399
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0178011/11Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os02g584503/11Uncharacterized ACR, COG1399 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01720OsAffx.24453.1.S1_at11/114+464694..469028hypothetical protein
LOC_Os04g01720OsAffx.24453.1.S1_x_at11/114+464694..469028hypothetical protein
LOC_Os04g01720OsAffx.24453.3.S1_x_at5/114+464694..469028hypothetical protein
LOC_Os04g01720OsAffx.24453.3.S1_at1/114+464694..469028hypothetical protein
LOC_Os04g01730OsAffx.31174.4.S1_x_at7/114+470063..470881hypothetical protein
LOC_Os04g01730OsAffx.31174.5.S1_x_at5/114+470063..470881hypothetical protein
LOC_Os04g01740Os.11039.1.S1_s_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740OsAffx.13615.1.S1_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740Os.49651.1.S1_s_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740Os.11039.2.S1_x_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740OsAffx.13615.1.S1_x_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740Os.11039.3.S1_at10/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01750OsAffx.25823.1.S1_at9/114+479673..481633hypothetical protein
LOC_Os04g01750OsAffx.29554.1.S1_at1/114+479673..481633hypothetical protein
LOC_Os04g01750OsAffx.30648.1.S1_at1/114+479673..481633hypothetical protein
LOC_Os04g01760OsAffx.20736.1.S1_at2/114+482972..485921hypothetical protein
LOC_Os04g01770OsAffx.10632.1.S1_at2/114+486534..488277retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01780Os.17160.1.S1_at11/114+489327..491551Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os04g01780Os.17160.1.S1_s_at11/114+489327..491551Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os04g01780OsAffx.13616.1.S1_x_at11/114+489327..491551Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os04g01790OsAffx.18976.1.S1_at4/114+492825..496545retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01790OsAffx.18976.1.S1_x_at1/114+492825..496545retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01800OsAffx.3697.1.S1_at10/114+506088..506955hypothetical protein
LOC_Os04g01810OsAffx.25825.1.S1_at11/114+510720..515159Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os04g01820Os.10827.1.S1_x_at10/114+515910..519698transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g01820Os.46055.2.S1_x_at5/114+515910..519698transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13616.1.S1_x_at--1145--4551Chr04:490915..490939 (25 bp)
GCGCCTCAAGGTATATTTGCGAATT
LOC_Os04g01780
OsAffx.13616.1.S1_x_at--183--6272Chr04:490978..491002 (25 bp)
GATGTGGTTGATCTCGGCACGATAT
LOC_Os04g01780
OsAffx.13616.1.S1_x_at--21--2371Chr04:491015..491039 (25 bp)
AAACCAAAGCTCCTGTGCTAACTGG
LOC_Os04g01780
OsAffx.13616.1.S1_x_at--530--1251Chr04:491070..491094 (25 bp)
AGATTGGGATGACCGGTTGCATTTC
LOC_Os04g01780
OsAffx.13616.1.S1_x_at--729--7911Chr04:491084..491108 (25 bp)
GGTTGCATTTCCCAGCTGGAGAAAA
LOC_Os04g01780
OsAffx.13616.1.S1_x_at--1105--1492Chr04:491126..491150 (25 bp)
AGCACATCAGGGACATCATTCACTT
LOC_Os04g01780
OsAffx.13616.1.S1_x_at--395--10451Chr04:491149..491173 (25 bp)
TTAGAGATCACGCTCGATGCCCTGT
LOC_Os04g01780
OsAffx.13616.1.S1_x_at--766--9511Chr04:491193..491217 (25 bp)
TCTCTGCGTTGGCTGCGGCGAAAAT
LOC_Os04g01780
OsAffx.13616.1.S1_x_at--304--6131Chr04:491285..491309 (25 bp)
GAGGGCCTCTCAAAAGACCTGTTGA
LOC_Os04g01780
OsAffx.13616.1.S1_x_at--871--7032Chr04:491328..491352 (25 bp)
GTAAACACCGCACGGCAGATTTTAG
LOC_Os04g01780
OsAffx.13616.1.S1_x_at--1097--8891Chr04:491424..491448 (25 bp)
TGAGCTCATATCCTACTGTAAGACG
LOC_Os04g01780
Target Sequence 
GCGCCTCAAGGTATATTTGCGAATTTTTCCCTGTTACTGACCGAAGGCAGAGTAGAGGAACCTGATGTGGTTGATCTCGG
CACGATATTTGAAGAAGAACAAACCAAAGCTCCTGTGCTAACTGGAAGCCAAGAAGATGGAGACGACGAAGATATAGATT
GGGATGACCGGTTGCATTTCCCAGCTGGAGAAAAGGAGGTTGATATCTCGAAGCACATCAGGGACATCATTCACTTAGAG
ATCACGCTCGATGCCCTGTGCAGTCCCACCTGCAAAGGTCTCTGCGTTGGCTGCGGCGAAAATCTCAACACCAGCAGCTG
CAGCTGCAACACAGAGAAACAGCAGGCTAAGGCTAAGAATGTTCAGCGGCGAGGGCCTCTCAAAAGACCTGTTGAAACCA
CTGCAAAGGTGATGTAAACACCGCACGGCAGATTTTAGACAGTGATATGTATGTAATACGTTGTAGCAGTATTCGAAGAT
AATATGTTTAGATGATAAATTTCATTTTTTGAGCTCATATCCTACTGTAAGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13616.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis