Browse Element(s) Details


OsAffx.24453.1.S1_at

Description tigr:9632.m00076
TID=OsAffx.24453.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0172011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01674Os.52423.1.S1_at11/114+444133..447640D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01674OsAffx.3696.1.S1_at11/114+444133..447640D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01674OsAffx.3696.1.S1_s_at11/114+444133..447640D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01690Os.50413.1.S1_at11/114+454276..457795Arginine decarboxylase, putative, expressed
LOC_Os04g01710Os.49157.1.S1_s_at11/114+461676..463423Papain family cysteine protease containing protein, expressed
LOC_Os04g01720OsAffx.24453.1.S1_at11/114+464694..469028hypothetical protein
LOC_Os04g01720OsAffx.24453.1.S1_x_at11/114+464694..469028hypothetical protein
LOC_Os04g01720OsAffx.24453.3.S1_x_at5/114+464694..469028hypothetical protein
LOC_Os04g01720OsAffx.24453.3.S1_at1/114+464694..469028hypothetical protein
LOC_Os04g01730OsAffx.31174.4.S1_x_at7/114+470063..470881hypothetical protein
LOC_Os04g01730OsAffx.31174.5.S1_x_at5/114+470063..470881hypothetical protein
LOC_Os04g01740Os.11039.1.S1_s_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740OsAffx.13615.1.S1_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740Os.49651.1.S1_s_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740Os.11039.2.S1_x_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740OsAffx.13615.1.S1_x_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740Os.11039.3.S1_at10/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01750OsAffx.25823.1.S1_at9/114+479673..481633hypothetical protein
LOC_Os04g01750OsAffx.29554.1.S1_at1/114+479673..481633hypothetical protein
LOC_Os04g01750OsAffx.30648.1.S1_at1/114+479673..481633hypothetical protein
LOC_Os04g01760OsAffx.20736.1.S1_at2/114+482972..485921hypothetical protein
LOC_Os04g01770OsAffx.10632.1.S1_at2/114+486534..488277retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01780Os.17160.1.S1_at11/114+489327..491551Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os04g01780Os.17160.1.S1_s_at11/114+489327..491551Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os04g01780OsAffx.13616.1.S1_x_at11/114+489327..491551Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os04g01790OsAffx.18976.1.S1_at4/114+492825..496545retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01790OsAffx.18976.1.S1_x_at1/114+492825..496545retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24453.1.S1_at--206--7191Chr04:464777..464801 (25 bp)
GTCGGCGCTCACTATGCTAATGTCA
LOC_Os04g01720
OsAffx.24453.1.S1_at--566--8391Chr04:464774..464798 (25 bp)
GGCGCTCACTATGCTAATGTCACGT
LOC_Os04g01720
OsAffx.24453.1.S1_at--597--4831Chr04:464771..464795 (25 bp)
GCTCACTATGCTAATGTCACGTCAC
LOC_Os04g01720
OsAffx.24453.1.S1_at--933--9671Chr04:464769..464793 (25 bp)
TCACTATGCTAATGTCACGTCACCG
LOC_Os04g01720
OsAffx.24453.1.S1_at--528--2031Chr04:464767..464791 (25 bp)
ACTATGCTAATGTCACGTCACCGAT
LOC_Os04g01720
OsAffx.24453.1.S1_at--738--611Chr04:464764..464788 (25 bp)
ATGCTAATGTCACGTCACCGATGGC
LOC_Os04g01720
OsAffx.24453.1.S1_at--1111--4831Chr04:464762..464786 (25 bp)
GCTAATGTCACGTCACCGATGGCGG
LOC_Os04g01720
OsAffx.24453.1.S1_at--335--9771Chr04:464760..464784 (25 bp)
TAATGTCACGTCACCGATGGCGGCC
LOC_Os04g01720
OsAffx.24453.1.S1_at--972--8731Chr04:464757..464781 (25 bp)
TGTCACGTCACCGATGGCGGCCATA
LOC_Os04g01720
OsAffx.24453.1.S1_at--682--9671Chr04:464755..464779 (25 bp)
TCACGTCACCGATGGCGGCCATAGG
LOC_Os04g01720
OsAffx.24453.1.S1_at--243--4711Chr04:464741..464765 (25 bp)
GCGGCCATAGGGATCTCGCGTGCCT
LOC_Os04g01720
Target Sequence 
GTCGGCGCTCACTATGCTAATGTCACGTCACCGATGGCGGCCATAGGGATCTCGCGTGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24453.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis