Browse Element(s) Details


Os.52423.1.S1_at

Description gb:AK102907.1
DB_XREF= gi:32988116
TID=Os.52423.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52423 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033113H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033113H06, full insert sequence.
FL= gb:AK102907.1 gb:AK067010.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0167411/11D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01630NANA4+416053..419343retrotransposon protein, putative, unclassified
LOC_Os04g01640NANA4+423796..424539hypothetical protein
LOC_Os04g01650Os.54604.1.S1_at9/114+433847..435380D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein
LOC_Os04g01660Os.53039.1.S1_at11/114+436550..437648D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01674Os.52423.1.S1_at11/114+444133..447640D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01674OsAffx.3696.1.S1_at11/114+444133..447640D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01674OsAffx.3696.1.S1_s_at11/114+444133..447640D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01690Os.50413.1.S1_at11/114+454276..457795Arginine decarboxylase, putative, expressed
LOC_Os04g01710Os.49157.1.S1_s_at11/114+461676..463423Papain family cysteine protease containing protein, expressed
LOC_Os04g01720OsAffx.24453.1.S1_at11/114+464694..469028hypothetical protein
LOC_Os04g01720OsAffx.24453.1.S1_x_at11/114+464694..469028hypothetical protein
LOC_Os04g01720OsAffx.24453.3.S1_x_at5/114+464694..469028hypothetical protein
LOC_Os04g01720OsAffx.24453.3.S1_at1/114+464694..469028hypothetical protein
LOC_Os04g01730OsAffx.31174.4.S1_x_at7/114+470063..470881hypothetical protein
LOC_Os04g01730OsAffx.31174.5.S1_x_at5/114+470063..470881hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006564biological_processL-serine biosynthesis
GO:0009507cellular_componentchloroplast
GO:0004617molecular_functionphosphoglycerate dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity
GO:0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52423.1.S1_at--787--7331Chr04:447338..447362 (25 bp)
GTGCAGCTCTGAACGTACTACAAAC
LOC_Os04g01674
Os.52423.1.S1_at--9--1171Chr04:447364..447388 (25 bp)
AGTACACTCAGTTTCTGAACCTCAA
LOC_Os04g01674
Os.52423.1.S1_at--306--9711Chr04:447385..447409 (25 bp)
TCAACCTGCATTCTCAACCTGAAAA
LOC_Os04g01674
Os.52423.1.S1_at--1069--8131Chr04:447418..447442 (25 bp)
GGACAAGTTGTTGCTTATTCATGTT
LOC_Os04g01674
Os.52423.1.S1_at--774--9091Chr04:447457..447481 (25 bp)
TGCTGCGATTTCGATCTGAGCCAAT
LOC_Os04g01674
Os.52423.1.S1_at--976--2071Chr04:447518..447542 (25 bp)
ACATTGTTGTGTTCACTGATTTGCA
LOC_Os04g01674
Os.52423.1.S1_at--779--8831Chr04:447534..447558 (25 bp)
TGATTTGCAAGCAGCCCTGTATCTT
LOC_Os04g01674
Os.52423.1.S1_at--818--4191Chr04:447548..447572 (25 bp)
CCCTGTATCTTGTTGTTGTAACACA
LOC_Os04g01674
Os.52423.1.S1_at--376--7051Chr04:447565..447589 (25 bp)
GTAACACACATCAGAGTAAACTCAA
LOC_Os04g01674
Os.52423.1.S1_at--1--3751Chr04:447585..447609 (25 bp)
CTCAATCAATACTCCATTCTTGTGG
LOC_Os04g01674
Os.52423.1.S1_at--378--10511Chr04:447617..447640 (24 bp)
TTCAATGTCTTAATTTTCTTTAGGC
LOC_Os04g01674
Target Sequence 
GTGCAGCTCTGAACGTACTACAAACAAGTACACTCAGTTTCTGAACCTCAACCTGCATTCTCAACCTGAAAAATAACAAG
GGACAAGTTGTTGCTTATTCATGTTTGTATGTATGCATATGCTGCGATTTCGATCTGAGCCAATCATACATAAATTGGGA
GGATAATCTGAGATGATTACACATTGTTGTGTTCACTGATTTGCAAGCAGCCCTGTATCTTGTTGTTGTAACACACATCA
GAGTAAACTCAATCAATACTCCATTCTTGTGGAGTATTATTCAATGTCTTAATTTTCTTTAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52423.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis