Browse Element(s) Details


Os.50413.1.S1_at

Description gb:AK058573.1
DB_XREF= gi:32968591
TID=Os.50413.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50413 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-017-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-017-E10, full insert sequence.
FL= gb:AK058573.1 gb:AK121110.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0169011/11Arginine decarboxylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01650Os.54604.1.S1_at9/114+433847..435380D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein
LOC_Os04g01660Os.53039.1.S1_at11/114+436550..437648D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01674Os.52423.1.S1_at11/114+444133..447640D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01674OsAffx.3696.1.S1_at11/114+444133..447640D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01674OsAffx.3696.1.S1_s_at11/114+444133..447640D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01690Os.50413.1.S1_at11/114+454276..457795Arginine decarboxylase, putative, expressed
LOC_Os04g01710Os.49157.1.S1_s_at11/114+461676..463423Papain family cysteine protease containing protein, expressed
LOC_Os04g01720OsAffx.24453.1.S1_at11/114+464694..469028hypothetical protein
LOC_Os04g01720OsAffx.24453.1.S1_x_at11/114+464694..469028hypothetical protein
LOC_Os04g01720OsAffx.24453.3.S1_x_at5/114+464694..469028hypothetical protein
LOC_Os04g01720OsAffx.24453.3.S1_at1/114+464694..469028hypothetical protein
LOC_Os04g01730OsAffx.31174.4.S1_x_at7/114+470063..470881hypothetical protein
LOC_Os04g01730OsAffx.31174.5.S1_x_at5/114+470063..470881hypothetical protein
LOC_Os04g01740Os.11039.1.S1_s_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740OsAffx.13615.1.S1_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740Os.49651.1.S1_s_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740Os.11039.2.S1_x_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740OsAffx.13615.1.S1_x_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740Os.11039.3.S1_at10/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01750OsAffx.25823.1.S1_at9/114+479673..481633hypothetical protein
LOC_Os04g01750OsAffx.29554.1.S1_at1/114+479673..481633hypothetical protein
LOC_Os04g01750OsAffx.30648.1.S1_at1/114+479673..481633hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006596biological_processpolyamine biosynthesis
GO:0006970biological_processresponse to osmotic stress
GO:0006979biological_processresponse to oxidative stress
GO:0009446biological_processputrescine biosynthesis
GO:0009611biological_processresponse to wounding
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0048316biological_processseed development
GO:0008792molecular_functionarginine decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50413.1.S1_at--341--7851Chr04:457234..457258 (25 bp)
GGTAGAGAAGTTCATCCGCGACGCC
LOC_Os04g01690
Os.50413.1.S1_at--416--6211Chr04:457346..457370 (25 bp)
GAGGCCCTGGCGTGCAAGCACAACC
LOC_Os04g01690
Os.50413.1.S1_at--1028--1271Chr04:457428..457452 (25 bp)
AGATCGTCTCCGTTGAGCTCGGCCC
LOC_Os04g01690
Os.50413.1.S1_at--1160--9591Chr04:457467..457491 (25 bp)
TCATCGGCACGATGAGGTACGACGT
LOC_Os04g01690
Os.50413.1.S1_at--14--1451Chr04:457494..457518 (25 bp)
AGAACGACATTAGCGATGTGATCGA
LOC_Os04g01690
Os.50413.1.S1_at--695--2751Chr04:457568..457592 (25 bp)
AAGAAAGGGCTGACCACCATGCCCT
LOC_Os04g01690
Os.50413.1.S1_at--1079--591Chr04:457586..457610 (25 bp)
ATGCCCTACCTCAACGATTACAAGC
LOC_Os04g01690
Os.50413.1.S1_at--791--1131Chr04:457669..457693 (25 bp)
AGTGCCTCGACCATGATCCATGCCT
LOC_Os04g01690
Os.50413.1.S1_at--312--1871Chr04:457700..457724 (25 bp)
ACGAGCACACGGAGCACAGTCTGTA
LOC_Os04g01690
Os.50413.1.S1_at--1104--3871Chr04:457720..457744 (25 bp)
CTGTATGACTGTATATTTGCCTGCT
LOC_Os04g01690
Os.50413.1.S1_at--2--10291Chr04:457735..457759 (25 bp)
TTTGCCTGCTTCATACTAGTAGTTT
LOC_Os04g01690
Target Sequence 
GGTAGAGAAGTTCATCCGCGACGCCGTGACGCTGCCGCTGCACCCACTCGACGACGCGGCGGCGGAGCACGGCGGCTACT
ACGTGGCGGCGCTGCTGTCGGGGGCGTACCAGGAGGCCCTGGCGTGCAAGCACAACCTGTTCAGTGGCCCCACGCTCGTG
CGCGTCGAGAGCGCCGGCGGCGGCGGCGCGTTCAAGATCGTCTCCGTTGAGCTCGGCCCGACGGCGGAGGAGGTCATCGG
CACGATGAGGTACGACGTGAAGAACGACATTAGCGATGTGATCGAGAAGGTTGCGACGGAGAATGGCGTGTGGCCGATGG
TTGAGCCGCTNATGAAGAAAGGGCTGACCACCATGCCCTACCTCAACGATTACAAGCCCCCCAAAACCACCTTTTAAGCT
TGTTTAGAAGTAGTCTTTATCGACATATAAATAANAGTGCCTCGACCATGATCCATGCCTCCATGGACGAGCACACGGAG
CACAGTCTGTATGACTGTATATTTGCCTGCTTCATACTAGTAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50413.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis