Browse Element(s) Details


Os.49157.1.S1_s_at

Description gb:AK110974.1
DB_XREF= gi:32996183
TID=Os.49157.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49157 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-C02, full insert sequence.
FL= gb:AK110974.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0171011/11Papain family cysteine protease containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01660Os.53039.1.S1_at11/114+436550..437648D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01674Os.52423.1.S1_at11/114+444133..447640D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01674OsAffx.3696.1.S1_at11/114+444133..447640D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01674OsAffx.3696.1.S1_s_at11/114+444133..447640D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01690Os.50413.1.S1_at11/114+454276..457795Arginine decarboxylase, putative, expressed
LOC_Os04g01710Os.49157.1.S1_s_at11/114+461676..463423Papain family cysteine protease containing protein, expressed
LOC_Os04g01720OsAffx.24453.1.S1_at11/114+464694..469028hypothetical protein
LOC_Os04g01720OsAffx.24453.1.S1_x_at11/114+464694..469028hypothetical protein
LOC_Os04g01720OsAffx.24453.3.S1_x_at5/114+464694..469028hypothetical protein
LOC_Os04g01720OsAffx.24453.3.S1_at1/114+464694..469028hypothetical protein
LOC_Os04g01730OsAffx.31174.4.S1_x_at7/114+470063..470881hypothetical protein
LOC_Os04g01730OsAffx.31174.5.S1_x_at5/114+470063..470881hypothetical protein
LOC_Os04g01740Os.11039.1.S1_s_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740OsAffx.13615.1.S1_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740Os.49651.1.S1_s_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740Os.11039.2.S1_x_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740OsAffx.13615.1.S1_x_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740Os.11039.3.S1_at10/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01750OsAffx.25823.1.S1_at9/114+479673..481633hypothetical protein
LOC_Os04g01750OsAffx.29554.1.S1_at1/114+479673..481633hypothetical protein
LOC_Os04g01750OsAffx.30648.1.S1_at1/114+479673..481633hypothetical protein
LOC_Os04g01760OsAffx.20736.1.S1_at2/114+482972..485921hypothetical protein
LOC_Os04g01770OsAffx.10632.1.S1_at2/114+486534..488277retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49157.1.S1_s_at--632--31Chr04:461982..462006 (25 bp)
ATTGGATTGCCAAGAACTCGTACGG
LOC_Os04g01710
Os.49157.1.S1_s_at--1065--2951Chr04:461941..461965 (25 bp)
AATGGCTTCGTCTACTTGGCCAAGG
LOC_Os04g01710
Os.49157.1.S1_s_at--630--10851Chr04:461926..461950 (25 bp)
TTGGCCAAGGACACAGCTGACCGCA
LOC_Os04g01710
Os.49157.1.S1_s_at--920--7731Chr04:461856..461880 (25 bp)
GGTGAAACCGGCCACACAGACGAAA
LOC_Os04g01710
Os.49157.1.S1_s_at--1096--6991Chr04:461823..461847 (25 bp)
GTACTAGTTTATGTCTGTGGCTCAG
LOC_Os04g01710
Os.49157.1.S1_s_at--473--8491Chr04:461806..461830 (25 bp)
TGGCTCAGGCTGATCGTATCGATGG
LOC_Os04g01710
Os.49157.1.S1_s_at--302--4031Chr04:461792..461816 (25 bp)
CGTATCGATGGATCATGGTGGCAAT
LOC_Os04g01710
Os.49157.1.S1_s_at--645--7531Chr04:461775..461799 (25 bp)
GTGGCAATACTTGTAGCTGCATACA
LOC_Os04g01710
Os.49157.1.S1_s_at--656--8671Chr04:461742..461766 (25 bp)
TGTGTCTATTTCACCCATCTATAGC
LOC_Os04g01710
Os.49157.1.S1_s_at--30--4331Chr04:461728..461752 (25 bp)
CCATCTATAGCTCCATCGTTTTTAA
LOC_Os04g01710
Os.49157.1.S1_s_at--263--8851Chr04:461677..461701 (25 bp)
TGATCTCTCATCATGTGTGTTGTTT
LOC_Os04g01710
Target Sequence 
ATTGGATTGCCAAGAACTCGTACGGCAATCTGTGGGGCGACAATGGCTTCGTCTACTTGGCCAAGGACACAGCTGACCGC
ACAGGTGTCTGCGGCCTCGCCATATGGCCGACCTTTCCCACCATTCGGTGAAACCGGCCACACAGACGAAAAGTTCGNTG
TACTAGTTTATGTCTGTGGCTCAGGCTGATCGTATCGATGGATCATGGTGGCAATACTTGTAGCTGCATACATGTATATA
TGTGTCTATTTCACCCATCTATAGCTCCATCGTTTTTAAATTACTAGAATAAATAAAAGTCATGATGATCTCTCATCATG
TGTGTTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49157.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis