Browse Element(s) Details


OsAffx.24453.3.S1_x_at

Description tigr:9630.m02594
TID=OsAffx.24453.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2735011/11expressed protein
LOC_Os02g213206/11hypothetical protein
LOC_Os04g017205/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27310OsAffx.24451.1.S1_at11/112+16082677..16088250SCP-like extracellular protein, expressed
LOC_Os02g27320NANA2+16091950..16096190retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g27330OsAffx.24452.1.S1_at11/112+16098367..16098705expressed protein
LOC_Os02g27340Os.18708.1.S1_at11/112+16098752..16104465Riboflavin biosynthesis protein ribD, putative, expressed
LOC_Os02g27350OsAffx.24453.3.S1_x_at11/112+16105743..16108460expressed protein
LOC_Os02g27350OsAffx.24453.3.S1_at11/112+16105743..16108460expressed protein
LOC_Os02g27350OsAffx.24453.1.S1_x_at4/112+16105743..16108460expressed protein
LOC_Os02g27360Os.53993.1.S1_x_at11/112+16109075..16114568aspartyl protease family protein, putative, expressed
LOC_Os02g27360Os.34493.1.A1_at10/112+16109075..16114568aspartyl protease family protein, putative, expressed
LOC_Os02g27360Os.53993.2.S1_at10/112+16109075..16114568aspartyl protease family protein, putative, expressed
LOC_Os02g27370OsAffx.16940.2.S1_s_at11/112+16129148..16129498hypothetical protein
LOC_Os02g27370OsAffx.24405.1.S1_at2/112+16129148..16129498hypothetical protein
LOC_Os02g27370OsAffx.16940.1.S1_at1/112+16129148..16129498hypothetical protein
LOC_Os02g27380NANA2+16130523..16138359retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006820biological_processanion transport
GO:0005739cellular_componentmitochondrion
GO:0005741cellular_componentmitochondrial outer membrane
GO:0008308molecular_functionvoltage-gated ion-selective channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24453.3.S1_x_at--1057--8132Chr02:16107579..16107603 (25 bp)
GGACATGGCTATTATCTGCTTTTGC
LOC_Os02g27350
OsAffx.24453.3.S1_x_at--294--4893Chr02:16107596..16107620 (25 bp)
GCTTTTGCCCTGATAAATTTCCTAG
LOC_Os02g27350
OsAffx.24453.3.S1_x_at--379--7413Chr02:16108075..16108099 (25 bp)
GTGATACTCTTGATCTCAGCTCAGT
LOC_Os02g27350
OsAffx.24453.3.S1_x_at--509--8653Chr02:16108135..16108159 (25 bp)
TGGGCACAGTATCTAGCATTTCTCT
LOC_Os02g27350
OsAffx.24453.3.S1_x_at--163--751Chr02:16108170..16108194 (25 bp)
ATGTTTGCCGTCCTTCCATCCAAAA
LOC_Os02g27350
OsAffx.24453.3.S1_x_at--24--7773Chr02:16108244..16108268 (25 bp)
GGTGCAATGCATCCACCAGAGTGCA
LOC_Os02g27350
OsAffx.24453.3.S1_x_at--986--6793Chr02:16108270..16108294 (25 bp)
GTTTTGTCACTTCTATTGGCATGGA
LOC_Os02g27350
OsAffx.24453.3.S1_x_at--917--6091Chr02:16108293..16108317 (25 bp)
GAGTCATCTCTTGTGGTTGCATTTT
LOC_Os02g27350
OsAffx.24453.3.S1_x_at--532--3591Chr02:16108312..16108336 (25 bp)
CATTTTGTGGATCAGCTGGTGCTTA
LOC_Os02g27350
OsAffx.24453.3.S1_x_at--896--8851Chr02:16108349..16108373 (25 bp)
TGATGATTACTTGCAGCTACCCTGG
LOC_Os02g27350
OsAffx.24453.3.S1_x_at--271--4851Chr02:16108364..16108388 (25 bp)
GCTACCCTGGGATCCTAGAGGCATT
LOC_Os02g27350
Target Sequence 
GGACATGGCTATTATCTGCTTTTGCCCTGATAAATTTCCTAGAAGCTGGGACTGTGCAATTGGCAGTGAAGCTTGTGTAT
GTCAAGATTGCTGAGATGACAAGAATAAGATCTTGGGATCCAGTTATTGTCAATTTGGTTACTATAATAGCTTGCCAAAT
TTCTACAGAAGTGAAGAAGGGAGGGAGTGATACTCTTGATCTCAGCTCAGTTTGCAAGTACAAGAATGCTCATGATAGTA
TCCAAGTGGGCACAGTATCTAGCATTTCTCTATCACTGACCATGTTTGCCGTCCTTCCATCCAAAAAGCTTGTGACTAGT
ATCAAGATCCCTAACTATAATTCTAGACAAATGGAGGTGCAATGCATCCACCAGAGTGCAAGTTTTGTCACTTCTATTGG
CATGGAGTCATCTCTTGTGGTTGCATTTTGTGGATCAGCTGGTGCTTATGTATTAGCTCTTGATGATTACTTGCAGCTAC
CCTGGGATCCTAGAGGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24453.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis