Browse Element(s) Details


Os.18708.1.S1_at

Description gb:AK058742.1
DB_XREF= gi:32968760
TID=Os.18708.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18708 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013024H13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-019-G09, full insert sequence.
FL= gb:AK065460.1 gb:AK058742.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2734011/11Riboflavin biosynthesis protein ribD, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27300OsAffx.12223.1.S1_at11/112+16076706..16077536SCP-like extracellular protein
LOC_Os02g27310OsAffx.24451.1.S1_at11/112+16082677..16088250SCP-like extracellular protein, expressed
LOC_Os02g27320NANA2+16091950..16096190retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g27330OsAffx.24452.1.S1_at11/112+16098367..16098705expressed protein
LOC_Os02g27340Os.18708.1.S1_at11/112+16098752..16104465Riboflavin biosynthesis protein ribD, putative, expressed
LOC_Os02g27350OsAffx.24453.3.S1_x_at11/112+16105743..16108460expressed protein
LOC_Os02g27350OsAffx.24453.3.S1_at11/112+16105743..16108460expressed protein
LOC_Os02g27350OsAffx.24453.1.S1_x_at4/112+16105743..16108460expressed protein
LOC_Os02g27360Os.53993.1.S1_x_at11/112+16109075..16114568aspartyl protease family protein, putative, expressed
LOC_Os02g27360Os.34493.1.A1_at10/112+16109075..16114568aspartyl protease family protein, putative, expressed
LOC_Os02g27360Os.53993.2.S1_at10/112+16109075..16114568aspartyl protease family protein, putative, expressed
LOC_Os02g27370OsAffx.16940.2.S1_s_at11/112+16129148..16129498hypothetical protein
LOC_Os02g27370OsAffx.24405.1.S1_at2/112+16129148..16129498hypothetical protein
LOC_Os02g27370OsAffx.16940.1.S1_at1/112+16129148..16129498hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008270molecular_functionzinc ion binding
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18708.1.S1_at--899--2351Chr02:16100835..16100859 (25 bp)
AAAGCTGGCTAAGAGTCCTGAAGAA
LOC_Os02g27340
Os.18708.1.S1_at--949--4851Chr02:16100807..16100831 (25 bp)
GCTAGAATAGGACGCACTCGGCAAA
LOC_Os02g27340
Os.18708.1.S1_at--239--6991Chr02:16099290..16099314 (25 bp)
GTACGACCAGATTGGGATTCCATCA
LOC_Os02g27340
Os.18708.1.S1_at--463--10411Chr02:16099222..16099246 (25 bp)
TTATTCCCATCTGACTGACATGCTG
LOC_Os02g27340
Os.18708.1.S1_at--841--2571Chr02:16099192..16099216 (25 bp)
AACGGCTGGCTCTGTTCTTGTTGAG
LOC_Os02g27340
Os.18708.1.S1_at--586--851Chr02:16099169..16099193 (25 bp)
AGGCGTCGCCCCACGATTTATTTTG
LOC_Os02g27340
Os.18708.1.S1_at--685--131Chr02:16099115..16099139 (25 bp)
ATTACTTGGGTAGATTGCTGATGCA
LOC_Os02g27340
Os.18708.1.S1_at--84--6151Chr02:16099020..16099044 (25 bp)
GAGGTGATCATAACAGCAGACGTTT
LOC_Os02g27340
Os.18708.1.S1_at--19--2252Chr05:29298758..29298786 (23 bp)
AAATTTGAGATGCTTTCGTTGCCGA
NONE
Os.18708.1.S1_at--1034--411Chr02:16098869..16098893 (25 bp)
ATCATCTTGTTGTACTGGTCTGGTC
LOC_Os02g27340
Os.18708.1.S1_at--1016--6991Chr02:16098858..16098882 (25 bp)
GTACTGGTCTGGTCTGCAAATATAA
LOC_Os02g27340
Target Sequence 
AAAGCTGGCTAAGAGTCCTGAAGAAGCTGCTAGAATAGGACGCACTCGGCAAAGAGAATTTCAAGAATTGGTACGACCAG
ATTGGGATTCCATCAAAATTGAAGTGATGTACAGAGCTACAAAGCGCAAGTTCNCAACTTATTCCCATCTGACTGACATG
CTGTTGTCAACGGCTGGCTCTGTTCTTGTTGAGGCGTCGCCCCACGATTTATTTTGGGGCGGTGGGCGCGAGGGCGAAGG
TATGAATTACTTGGGTAGATTGCTGATGCAATTGCGATCAGAGATTCTAGGAACAATTCAAACAGCTGTTGAGGTAGGGG
AGCCAGCTTGATTTGCTGGAGAGGTGATCATAACAGCAGACGTTTTGATCTGGGGTNTTTATATGTATCATTATGGTGAT
TGCCTTCAAAATTTTGTGAAACATTNGTTTCTTTATCTCTCTAAATTCCTGTAGAAATTTGAGATGCTTTCGTTGCCGAA
TTTTATTTGTTATCATCTTGTTGTACTGGTCTGGTCTGCAAATATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18708.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis