Browse Element(s) Details


OsAffx.24451.1.S1_at

Description tigr:9630.m02590
TID=OsAffx.24451.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to receptor kinase homolog A_TM018A10.19 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2731011/11SCP-like extracellular protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27280OsAffx.27843.1.S1_at3/112+16060713..16064325transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g27290OsAffx.12222.1.S1_at11/112+16068149..16068750hypothetical protein
LOC_Os02g27300OsAffx.12223.1.S1_at11/112+16076706..16077536SCP-like extracellular protein
LOC_Os02g27310OsAffx.24451.1.S1_at11/112+16082677..16088250SCP-like extracellular protein, expressed
LOC_Os02g27320NANA2+16091950..16096190retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g27330OsAffx.24452.1.S1_at11/112+16098367..16098705expressed protein
LOC_Os02g27340Os.18708.1.S1_at11/112+16098752..16104465Riboflavin biosynthesis protein ribD, putative, expressed
LOC_Os02g27350OsAffx.24453.3.S1_x_at11/112+16105743..16108460expressed protein
LOC_Os02g27350OsAffx.24453.3.S1_at11/112+16105743..16108460expressed protein
LOC_Os02g27350OsAffx.24453.1.S1_x_at4/112+16105743..16108460expressed protein
LOC_Os02g27360Os.53993.1.S1_x_at11/112+16109075..16114568aspartyl protease family protein, putative, expressed
LOC_Os02g27360Os.34493.1.A1_at10/112+16109075..16114568aspartyl protease family protein, putative, expressed
LOC_Os02g27360Os.53993.2.S1_at10/112+16109075..16114568aspartyl protease family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24451.1.S1_at--383--9251Chr02:16087288..16087312 (25 bp)
TCCTAAGATATCTGACTTCGGCTTG
LOC_Os02g27310
OsAffx.24451.1.S1_at--553--1071Chr02:16087326..16087350 (25 bp)
AGGGAGACCACACAAATCATATCAC
LOC_Os02g27310
OsAffx.24451.1.S1_at--548--5771Chr02:16087353..16087482 (25 bp)
GACGAGTTGCCGGAACCTATGGATA
LOC_Os02g27310
OsAffx.24451.1.S1_at--1118--5011Chr02:16087499..16087523 (25 bp)
GCAGTTCTTGGTCATGTTTCCACTA
LOC_Os02g27310
OsAffx.24451.1.S1_at--138--291Chr02:16087978..16088002 (25 bp)
ATAGTGGATCCATCATTGCGCTGTA
LOC_Os02g27310
OsAffx.24451.1.S1_at--578--3591Chr02:16087991..16088015 (25 bp)
CATTGCGCTGTAGAAGTGCCGAAAG
LOC_Os02g27310
OsAffx.24451.1.S1_at--1161--5951Chr02:16088059..16088083 (25 bp)
GAGAATCCAGGTGATAGGCCCCGGA
LOC_Os02g27310
OsAffx.24451.1.S1_at--149--4211Chr02:16088077..16088101 (25 bp)
CCCCGGATGTCCAATGTGATTCTGA
LOC_Os02g27310
OsAffx.24451.1.S1_at--887--7611Chr02:16088110..16088134 (25 bp)
GGGAAATCTACAACCTTGCCAGCTC
LOC_Os02g27310
OsAffx.24451.1.S1_at--559--4471Chr02:16088142..16088166 (25 bp)
GCCTGCCTTTCTCTTTAGGCTGAAT
LOC_Os02g27310
OsAffx.24451.1.S1_at--224--7871Chr02:16088188..16088212 (25 bp)
GGTATTAACAATCTGAATCCTTCAC
LOC_Os02g27310
Target Sequence 
TCCTAAGATATCTGACTTCGGCTTGGCAAGTGTTTTTGAGGGAGACCACACAAATCATATCACAAGACGAGTTGCCGGAA
CCTATGGATATATGGCACCTGAGTATGCAGTTCTTGGTCATGTTTCCACTAAGTCAGATATCTTTAGCTTTGGAGTAATT
ATTCTAGAAATATTGACTGGGAGGAGAAACACTATCTCATCTGAAACAATATGGACTGAGCATCTTTTAAGCTATGTATG
GGAGAATTGGACTAGGGGCACAATAACAGAGATAGTGGATCCATCATTGCGCTGTAGAAGTGCCGAAAGCGAGATTCTCA
AGTGCATACACATTGGACTATTGTGTGTTCAAGAGAATCCAGGTGATAGGCCCCGGATGTCCAATGTGATTCTGATGATC
GTTGGGAAATCTACAACCTTGCCAGCTCCTTCCAGGCCTGCCTTTCTCTTTAGGCTGAATGATGAGAACCATATCCATCA
TGGTATTAACAATCTGAATCCTTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24451.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis