Browse Element(s) Details


OsAffx.24452.1.S1_at

Description tigr:9630.m02592
TID=OsAffx.24452.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2733011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27300OsAffx.12223.1.S1_at11/112+16076706..16077536SCP-like extracellular protein
LOC_Os02g27310OsAffx.24451.1.S1_at11/112+16082677..16088250SCP-like extracellular protein, expressed
LOC_Os02g27320NANA2+16091950..16096190retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g27330OsAffx.24452.1.S1_at11/112+16098367..16098705expressed protein
LOC_Os02g27340Os.18708.1.S1_at11/112+16098752..16104465Riboflavin biosynthesis protein ribD, putative, expressed
LOC_Os02g27350OsAffx.24453.3.S1_x_at11/112+16105743..16108460expressed protein
LOC_Os02g27350OsAffx.24453.3.S1_at11/112+16105743..16108460expressed protein
LOC_Os02g27350OsAffx.24453.1.S1_x_at4/112+16105743..16108460expressed protein
LOC_Os02g27360Os.53993.1.S1_x_at11/112+16109075..16114568aspartyl protease family protein, putative, expressed
LOC_Os02g27360Os.34493.1.A1_at10/112+16109075..16114568aspartyl protease family protein, putative, expressed
LOC_Os02g27360Os.53993.2.S1_at10/112+16109075..16114568aspartyl protease family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24452.1.S1_at--851--1031Chr02:16098404..16098428 (25 bp)
AGGTCGTGAGGACGCCGGAGGAGGT
LOC_Os02g27330
OsAffx.24452.1.S1_at--270--5891Chr02:16098442..16098466 (25 bp)
GAGCGTGAGAAGATGGCGTTGCGGC
LOC_Os02g27330
OsAffx.24452.1.S1_at--942--1851Chr02:16098473..16098497 (25 bp)
ACGACAGGATGATCGCGAGGCGGGT
LOC_Os02g27330
OsAffx.24452.1.S1_at--1024--4031Chr02:16098506..16098530 (25 bp)
CGTTGCGGCGGCTGGATTTTGATTC
LOC_Os02g27330
OsAffx.24452.1.S1_at--1132--4671Chr02:16098513..16098537 (25 bp)
GCGGCTGGATTTTGATTCCCGGAAA
LOC_Os02g27330
OsAffx.24452.1.S1_at--1108--8331Chr02:16098515..16098539 (25 bp)
GGCTGGATTTTGATTCCCGGAAAAT
LOC_Os02g27330
OsAffx.24452.1.S1_at--295--10271Chr02:16098524..16098548 (25 bp)
TTGATTCCCGGAAAATCCTCGACCG
LOC_Os02g27330
OsAffx.24452.1.S1_at--723--9391Chr02:16098572..16098596 (25 bp)
TCGTCGACGAGACCAACTACAAGGA
LOC_Os02g27330
OsAffx.24452.1.S1_at--597--9371Chr02:16098575..16098599 (25 bp)
TCGACGAGACCAACTACAAGGACGT
LOC_Os02g27330
OsAffx.24452.1.S1_at--450--9011Chr02:16098646..16098670 (25 bp)
TGCACCCTGCGCTCTCAGGAATTGC
LOC_Os02g27330
OsAffx.24452.1.S1_at--1109--4271Chr02:16098651..16098675 (25 bp)
CCTGCGCTCTCAGGAATTGCAGGAA
LOC_Os02g27330
Target Sequence 
AGGTCGTGAGGACGCCGGAGGAGGTGGCGGCGGCGGCGGAGCGTGAGAAGATGGCGTTGCGGCGGGGGTACGACAGGATG
ATCGCGAGGCGGGTGAAGATGGCGTTGCGGCGGCTGGATTTTGATTCCCGGAAAATCCTCGACCGGCGCCAGACACCCTA
CAGCGTCGTCGTCGACGAGACCAACTACAAGGACGTCGACGCCGACGCCTTCCTGGGGATCCCCAAAGCCCCGTGCTACT
GCTGCACCCTGCGCTCTCAGGAATTGCAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24452.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis