Browse Element(s) Details


OsAffx.24453.1.S1_x_at

Description tigr:9632.m00076
TID=OsAffx.24453.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0172011/11hypothetical protein
LOC_Os02g213208/11hypothetical protein
LOC_Os02g273504/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01674Os.52423.1.S1_at11/114+444133..447640D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01674OsAffx.3696.1.S1_at11/114+444133..447640D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01674OsAffx.3696.1.S1_s_at11/114+444133..447640D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01690Os.50413.1.S1_at11/114+454276..457795Arginine decarboxylase, putative, expressed
LOC_Os04g01710Os.49157.1.S1_s_at11/114+461676..463423Papain family cysteine protease containing protein, expressed
LOC_Os04g01720OsAffx.24453.1.S1_at11/114+464694..469028hypothetical protein
LOC_Os04g01720OsAffx.24453.1.S1_x_at11/114+464694..469028hypothetical protein
LOC_Os04g01720OsAffx.24453.3.S1_x_at5/114+464694..469028hypothetical protein
LOC_Os04g01720OsAffx.24453.3.S1_at1/114+464694..469028hypothetical protein
LOC_Os04g01730OsAffx.31174.4.S1_x_at7/114+470063..470881hypothetical protein
LOC_Os04g01730OsAffx.31174.5.S1_x_at5/114+470063..470881hypothetical protein
LOC_Os04g01740Os.11039.1.S1_s_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740OsAffx.13615.1.S1_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740Os.49651.1.S1_s_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740Os.11039.2.S1_x_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740OsAffx.13615.1.S1_x_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740Os.11039.3.S1_at10/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01750OsAffx.25823.1.S1_at9/114+479673..481633hypothetical protein
LOC_Os04g01750OsAffx.29554.1.S1_at1/114+479673..481633hypothetical protein
LOC_Os04g01750OsAffx.30648.1.S1_at1/114+479673..481633hypothetical protein
LOC_Os04g01760OsAffx.20736.1.S1_at2/114+482972..485921hypothetical protein
LOC_Os04g01770OsAffx.10632.1.S1_at2/114+486534..488277retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01780Os.17160.1.S1_at11/114+489327..491551Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os04g01780Os.17160.1.S1_s_at11/114+489327..491551Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os04g01780OsAffx.13616.1.S1_x_at11/114+489327..491551Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os04g01790OsAffx.18976.1.S1_at4/114+492825..496545retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01790OsAffx.18976.1.S1_x_at1/114+492825..496545retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006820biological_processanion transport
GO:0005739cellular_componentmitochondrion
GO:0005741cellular_componentmitochondrial outer membrane
GO:0008308molecular_functionvoltage-gated ion-selective channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24453.1.S1_x_at--378--7413Chr02:16108075..16108099 (25 bp)
GTGATACTCTTGATCTCAGCTCAGT
LOC_Os02g27350
OsAffx.24453.1.S1_x_at--508--8653Chr02:16108135..16108159 (25 bp)
TGGGCACAGTATCTAGCATTTCTCT
LOC_Os02g27350
OsAffx.24453.1.S1_x_at--23--7773Chr02:16108244..16108268 (25 bp)
GGTGCAATGCATCCACCAGAGTGCA
LOC_Os02g27350
OsAffx.24453.1.S1_x_at--987--6793Chr02:16108270..16108294 (25 bp)
GTTTTGTCACTTCTATTGGCATGGA
LOC_Os02g27350
OsAffx.24453.1.S1_x_at--1005--3492Chr04:467640..467664 (25 bp)
CATGGAGTCGTCTCTTGTGGTTGCA
LOC_Os04g01720
OsAffx.24453.1.S1_x_at--391--3592Chr04:467617..467641 (25 bp)
CATTTTATGGATCAGCTGGTGCTTA
LOC_Os04g01720
OsAffx.24453.1.S1_x_at--880--10772Chr04:467581..467605 (25 bp)
TTGATGATCACTTGCAGCTACCCTG
LOC_Os04g01720
OsAffx.24453.1.S1_x_at--59--6212Chr04:467548..467572 (25 bp)
GAGGCACTGATCTTGAGCTTCAATT
LOC_Os04g01720
OsAffx.24453.1.S1_x_at--205--7191Chr04:464777..464801 (25 bp)
GTCGGCGCTCACTATGCTAATGTCA
LOC_Os04g01720
OsAffx.24453.1.S1_x_at--737--611Chr04:464764..464788 (25 bp)
ATGCTAATGTCACGTCACCGATGGC
LOC_Os04g01720
OsAffx.24453.1.S1_x_at--242--4711Chr04:464741..464765 (25 bp)
GCGGCCATAGGGATCTCGCGTGCCT
LOC_Os04g01720
Target Sequence 
GTGATACTCTTGATCTCAGCTCAGTTTGCAAGTACAAGAATGCTCATGATAGTATCCAAGTGGGCACAGTATCTAGCATT
TCTCTATCANTGACCATNTTTGNTGTCCTTCCATANAGAAAGCTTGNGACTAGTATCAAGATCCCTAACTATAATTCTGG
ACAAATGGAGGTGCAATGCATCCACCAGAGTGCAAGTTTTGTCACTTCTATTGGCATGGAGTCGTCTCTTGTGGTTGCAT
TTTATGGATCAGCTGGTGCTTANGGATTAGCTCTTGATGATCACTTGCAGCTACCCTGGGATCNTGGAGGCACTGATCTT
GAGCTTCAATTGCATCANCTTGGGGACAAGCTGATTTTNAAGGCGGGGAGAATGTNATGTAANTGGGNCGGATNGGNNTG
NNNNNNGNNNNCANNNCNNGCNNNNCNNNANNNNCNGNGCNNNGTCGGCGCTCACTATGCTAATGTCACGTCACCGATGG
CGGCCATAGGGATCTCGCGTGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24453.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis